KEGG   Arabidopsis thaliana (thale cress): AT1G03330
Entry
AT1G03330         CDS       T00041                                 
Symbol
LSM2
Name
(RefSeq) Small nuclear ribonucleoprotein family protein
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03018  RNA degradation
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT1G03330 (LSM2)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AT1G03330 (LSM2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT1G03330 (LSM2)
   03041 Spliceosome [BR:ath03041]
    AT1G03330 (LSM2)
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     AT1G03330 (LSM2)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     AT1G03330 (LSM2)
Spliceosome [BR:ath03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    AT1G03330 (LSM2)
 Complex C
  U2 snRNP components
    AT1G03330 (LSM2)
SSDB
Motif
Pfam: LSM SM-ATX DUF1256 DUF150_C LSM14
Other DBs
NCBI-GeneID: 839526
NCBI-ProteinID: NP_563682
TAIR: AT1G03330
UniProt: Q1H595 A0A178W785
Position
1:complement(817934..819563)
AA seq 93 aa
MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPKDGVDVDLLHDAARREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgttcttttcttacttcaaggatttggttggacaagaagtgacggttgagctgaag
aatgatttagccataagaggaactcttcactcagttgatcagtatctgaatatcaagctc
gagaacactagggttgttgaccaggacaagtaccctcacatgctttcagtgagaaactgt
ttcatcagaggatctgtggtaaggtacgtgcagttacctaaagatggagtcgatgttgat
ttgcttcacgacgcagctagaagagaagctaggggtggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (27)   

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