KEGG   Arabidopsis thaliana (thale cress): AT1G08620
Entry
AT1G08620         CDS       T00041                                 
Symbol
PKDM7D
Name
(RefSeq) Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ath01009]
    AT1G08620 (PKDM7D)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ath03036]
    AT1G08620 (PKDM7D)
Enzymes [BR:ath01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     AT1G08620 (PKDM7D)
Protein phosphatases and associated proteins [BR:ath01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     AT1G08620 (PKDM7D)
Chromosome and associated proteins [BR:ath03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    AT1G08620 (PKDM7D)
SSDB
Motif
Pfam: JmjC FYRC JmjN zf-C5HC2 FYRN KDM5_C-hel
Other DBs
NCBI-GeneID: 837384
NCBI-ProteinID: NP_001320435
TAIR: AT1G08620
UniProt: C0SUT9 A0A7G2DRN2
Position
1:2736656..2743881
AA seq 1209 aa
MGTELMRICVKEDSDDLPSVPPGFESYATFTLKRVVPATTSDKAKTPAIESVSATEQAKM
EVESDEAKAARALRRRPWINHSGCDDDGDCAANNDNAASQNPDQNCDVKPALPKGVVRGC
EECKDCQKVTARWHPDEARRPDLEDAPVFYPSEEEFEDTLNYIAKIRPEAEKYGICRIVP
PPSWKPPCPLKEKQVWEGSKFTTRVQRVDKLQNRSSMKKISKLPNQMRKKKRKCMKMGMD
SVTNGMGDPCSASTGMNELETFGFEPGPGFTLKDFQKYADEFKAQYFKKSETSTDDKCKV
DNSIDCWEPALEDVEGEYWRIVDKATEEIEVLYGADLETGVFGSGFPKISSSHNASSSED
KYAKSGWNLNNFPRLPGSLLKYEGSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMH
WGAPKLWYGVGGKDAVKLEEAMRKHLPDLFEEQPDLLHKLVTQLSPSKLKTAGVPVHRCV
QHAGEFVLTFPRAYHAGFNSGFNCAEAVNVAPVDWLPHGQIAIELYCQQGRKTSISHDKL
LLGAAREVVKADWELNLLRKNTVDNLRWKAFSAKDGILAKTLKARIDMERTRREFLCNSS
LALKMHSNFDATNERECCICFFDLHLSAAGCRCSPEKYSCLTHVKELCSCPWVTKYFLFR
YDIDELNVLVEAVEGKLSSVYRWARQDLGLALSTDVSGSKMEIDEEGKVHKDPTPQTTAL
SGKDLQLKVTSKEVSKELEKTSKLSHVNLLLKEKEEQITSSHCMKPVKEETVCDSSDPNV
SACQPSEGGIICMTAVKSASGKKNSQSLPNDVILLSDDEYDIPRKRGSVRRDAISSGKKL
EIRERPTHVLALEASAKIAAPICQREGDSLRDTRNTISLPTNDQKTMRRDVPSSTSHAEV
NAEATGLTQDICNRMATNSHGGGKPTSCKSKNSGGLAIVDVVDGTRSSSGTPSCSQNNSP
DRFIRQKGPRIAKVVRRINCNVEPLSYGCVLSGKSWCSRRAIFPKGFRSRVKYINILDPT
NMCFYISEILDAGRNSPLFMVYLESNPSEVFVHMSPTRCWEMVRERVNQEITKQHKAGKS
DLPPLQPSGSPDGFEMFGYSSPAIVQAIEALDVNRVCTDYWDSRPYSRPQVQFPANPLLR
EANTSGRSNVGNLQLNPGHHISPTGINSILKVLFKKASMEELSSLQEVLSETNSDMVTEL
VKEEIQNRR
NT seq 3630 nt   +upstreamnt  +downstreamnt
atggggacagagctaatgagaatctgtgtgaaagaagatagtgatgatttgccatctgtt
cctcctggttttgaatcatatgcaacttttaccttaaaaagagtagtccctgctactact
tctgataaagccaagactcctgcaattgaaagtgtttctgcaaccgaacaagctaagatg
gaagttgaatctgatgaagccaaagctgctcgggctctacgccgtagaccttggattaat
catagcggatgtgatgatgatggtgattgtgctgcaaacaatgacaatgctgcatctcaa
aatcctgatcaaaattgtgatgtgaagccagctcttccaaagggtgtggtcaggggatgt
gaagaatgtaaagattgtcagaaggtaactgcgagatggcatccagatgaagctcgtagg
cctgaccttgaggacgcccctgtattctacccgagcgaagaggagtttgaagacacttta
aattatatcgctaaaataagaccggaggctgaaaagtatggaatctgtcgcattgttcct
cctccttcctggaaaccgccgtgcccactgaaagaaaagcaagtatgggagggttctaaa
tttacaacacgtgtccaaagagttgataaacttcagaatcggagttcaatgaagaagatt
tcaaagcttcctaatcaaatgagaaagaagaaaagaaagtgcatgaaaatgggaatggat
tctgtcactaatggtatgggcgatccctgttctgcaagcactggaatgaatgaacttgag
acgtttgggtttgaacctggtccagggttcacactaaaagacttccaaaaatatgctgat
gagttcaaggctcagtactttaaaaagagtgaaacttctacagacgataaatgtaaagtt
gataattcaatagactgctgggagccagcacttgaggatgttgaaggtgaatattggcgg
atagtagataaagcaactgaagagatagaggtgctatatggtgctgaccttgaaactggg
gtatttggtagcggattccccaagatatcatcaagtcacaatgcttcttcttcagaagat
aaatatgcaaaatcaggctggaacttaaataactttccaaggcttccgggatccctcctt
aagtacgagggcagtgatatttccggtgtccttgtgccgtggctgtatattgggatgtgc
ttttcttctttctgctggcatgttgaagatcaccacttgtattcgttgaattatatgcac
tggggtgcaccgaaattgtggtatggtgttggggggaaggatgctgttaaactcgaggag
gcaatgaggaagcatttgcctgacctttttgaagaacagcctgacttacttcataagcta
gttacacaactctccccgtcaaaactgaaaaccgcaggagtacctgtgcaccgttgcgtc
cagcatgctggagagtttgtcttgacttttcctcgggcatatcatgctggatttaattct
ggtttcaactgtgctgaagctgtgaatgtagcacccgttgactggttacctcatgggcag
attgccatagagttatactgtcaacagggtagaaaaacgtccatctcgcatgataaattg
ttgcttggggcagcaagggaagtagtgaaagccgactgggagctgaacttactaaggaaa
aatactgtagataacttaaggtggaaagcattcagtgcgaaggatggaattttggcaaaa
acattaaaggcacgcattgacatggaacgtacgagaagagaatttctgtgcaactcttca
cttgcattgaaaatgcacagtaatttcgatgctaccaacgagagagagtgctgtatatgc
ttctttgatttgcacctgtctgctgctggctgtcgttgttccccggagaagtattcatgt
ttgactcatgtgaaggagttgtgttcatgtccatgggttactaaatattttctatttcgc
tatgatatcgatgaactgaatgttcttgttgaggcagtggaaggaaaactgagttctgta
tatagatgggcgcgtcaagatttaggattggcattaagtacagacgtctcaggaagcaag
atggagatagatgaagaaggaaaagtccacaaggacccgactccacaaacaactgcactt
tcagggaaggatttgcagttgaaagtaacatcgaaagaagtaagtaaagagttagaaaag
actagtaaattatctcatgttaatttacttctgaaagaaaaggaggagcaaataacgtca
agtcactgtatgaagcctgtcaaagaagaaactgtttgtgattcttctgatccaaacgtt
tcagcttgccaaccatctgaaggaggcataatctgtatgacagctgttaagtccgcaagt
ggtaaaaagaattcacagagtctacccaatgatgtgatactcctcagcgatgatgagtat
gacatacctaggaaacgaggttctgtgagaagagatgcaatttcttctggcaagaaatta
gaaatacgagagagaccgacccacgttttggcgttagaagcttctgccaaaattgctgct
ccaatttgccaaagggaaggagattcgctgcgtgatacacgaaacactatatcattgcct
actaatgaccaaaaaacaatgagaagggatgtaccgagttctacttcgcacgcggaagtt
aatgcggaggctactgggcttactcaagatatatgtaacagaatggcaactaacagccac
ggtggtggaaaacctactagttgtaaatccaaaaactctggaggtttggctatagtggat
gttgtggatgggacaagaagtagttcaggtacaccgtcttgttcgcaaaataatagtccg
gataggttcatccgccaaaagggtccccgcattgcaaaggtcgtgaggagaatcaattgc
aatgtagagcctttaagttatggatgtgtgctgtctggaaaatcatggtgcagccggcga
gcaatttttcctaaaggatttcgtagccgggttaagtacataaacattttggatccaaca
aatatgtgcttctacatttcagaaattctggatgctggacgcaacagtccattgttcatg
gtttacttggagagtaatcccagtgaggtgttcgttcatatgtcgcctacaagatgctgg
gagatggtaagagagagagtaaatcaagagataactaagcagcacaaagctggaaaatca
gatcttcctcctttgcaaccctctgggagtcccgacggttttgaaatgtttggatattcg
tcacccgcaatcgtacaggctatcgaagcattagacgtgaatcgagtttgcacagactat
tgggattccaggccttattcccggccacaagttcagttccctgcaaatcctcttctcaga
gaagccaacacaagtggcagatcgaatgtgggaaatctccagctaaaccctggacaccat
atatcgcctactggaataaattctattcttaaagttctgttcaagaaagctagcatggag
gaactaagctcacttcaagaggttttaagtgagactaactcagatatggtgaccgaactt
gtgaaggaagagatccagaaccgtcgctga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (47)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (7)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (6)   
   Pfam (6)   
All databases (70)   

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