KEGG   Arabidopsis thaliana (thale cress): AT1G09770
Entry
AT1G09770         CDS       T00041                                 
Symbol
CDC5
Name
(RefSeq) cell division cycle 5
  KO
K12860  pre-mRNA-splicing factor CDC5/CEF1
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT1G09770 (CDC5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ath03041]
    AT1G09770 (CDC5)
   03400 DNA repair and recombination proteins [BR:ath03400]
    AT1G09770 (CDC5)
Spliceosome [BR:ath03041]
 Complex B
  Other components
   Prp19 complex
    AT1G09770 (CDC5)
 Complex C
   Prp19-CDC5 complex
    AT1G09770 (CDC5)
DNA repair and recombination proteins [BR:ath03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    AT1G09770 (CDC5)
SSDB
Motif
Pfam: Myb_Cef Myb_DNA-binding Myb_DNA-bind_6
Other DBs
NCBI-GeneID: 837506
NCBI-ProteinID: NP_172448
TAIR: AT1G09770
UniProt: P92948
Position
1:3161832..3165616
AA seq 844 aa
MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKT
EWTREEDEKLLHLAKLLPTQWRTIAPIVGRTPSQCLERYEKLLDAACTKDENYDAADDPR
KLRPGEIDPNPEAKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARR
LASLQKRRELKAAGIDGRHRKRKRKGIDYNAEIPFEKRAPAGFYDTADEDRPADQVKFPT
TIEELEGKRRADVEAHLRKQDVARNKIAQRQDAPAAILQANKLNDPEVVRKRSKLMLPPP
QISDHELEEIAKMGYASDLLAENEELTEGSAATRALLANYSQTPRQGMTPMRTPQRTPAG
KGDAIMMEAENLARLRDSQTPLLGGENPELHPSDFTGVTPRKKEIQTPNPMLTPSMTPGG
AGLTPRIGLTPSRDGSSFSMTPKGTPFRDELHINEDMDMHESAKLERQRREEARRSLRSG
LTGLPQPKNEYQIVAQPPPEESEEPEEKIEEDMSDRIAREKAEEEARQQALLKKRSKVLQ
RDLPRPPAASLAVIRNSLLSADGDKSSVVPPTPIEVADKMVREELLQLLEHDNAKYPLDD
KAEKKKGAKNRTNRSASQVLAIDDFDENELQEADKMIKEEGKFLCVSMGHENKTLDDFVE
AHNTCVNDLMYFPTRSAYELSSVAGNADKVAAFQEEMENVRKKMEEDEKKAEHMKAKYKT
YTKGHERRAETVWTQIEATLKQAEIGGTEVECFKALKRQEEMAASFRKKNLQEEVIKQKE
TESKLQTRYGNMLAMVEKAEEIMVGFRAQALKKQEDVEDSHKLKEAKLATGEEEDIAIAM
EASA
NT seq 2535 nt   +upstreamnt  +downstreamnt
atgaggattatgattaagggaggtgtttggaagaacaccgaagatgagattctcaaagcc
gccgtgatgaagtatggtaagaaccaatgggctcggatctcgtctcttctcgttcgtaag
tctgctaaacagtgtaaagctcgctggtacgagtggctcgatccatctatcaaaaagact
gaatggaccagagaagaagatgagaagcttctacatcttgctaaacttctgcctactcaa
tggagaactattgctcctattgtgggtcgtacaccatctcaatgtcttgagaggtatgag
aagctccttgatgcagcatgcactaaggatgaaaattatgatgcagcggatgatccacga
aaattacgtcctggtgagattgatccgaacccagaagcaaagcctgctcgtcctgatccg
gtagacatggacgaagatgagaaagaaatgctttctgaagcaagagctagattggctaac
acgaggggaaagaaggctaaaagaaaagctagagaaaaacaacttgaggaagctagaagg
cttgcttctctgcaaaaaagaagagaactaaaagcagctgggattgatggaaggcatagg
aaaagaaagagaaagggaatcgactataatgcagaaattccttttgaaaagagggcacct
gcgggattttatgatactgcggatgaagatcgtcctgctgatcaagtaaaatttccaact
accattgaagaacttgaaggaaaaagaagagctgatgtagaagcacatttacgcaaacaa
gatgttgcaaggaataaaattgctcagagacaggatgctccagcagctatattgcaagca
aacaagctgaatgatccggaagttgttaggaagaggtcaaagctgatgttaccaccaccg
cagatttcagaccacgagctagaagaaattgctaagatgggctatgccagtgaccttctt
gccgagaatgaggagctaacagaaggcagtgctgctactcgtgcacttttggcaaattac
tcacaaacaccaaggcaaggaatgacacccatgaggacacctcaaagaactcctgctggt
aaaggtgatgctattatgatggaagcagaaaacctggccagattaagagactctcagaca
cctttgctaggaggagaaaatcctgagttgcacccttctgacttcactggggtcactccg
agaaagaaggagattcaaacgcctaatccaatgttgaccccttcaatgactcctggtggt
gctggtcttactccaagaattggcttgacgccatcaagggatgggtcttctttttctatg
acacccaaagggactcccttcagggatgaacttcacattaacgaagacatggacatgcac
gaaagtgcaaaacttgagaggcagagacgagaggaagctagaaggagtttacgctctggt
ttgactgggcttcctcagccaaagaacgagtaccaaatagttgcacaacctcctcctgag
gaaagtgaagagccagaagagaaaattgaggaagacatgtcagacaggatagcgagggaa
aaggcggaggaagaagcaagacaacaggcattgcttaagaagagatccaaggtcttgcag
agagatcttcctagacccccagctgcttcattggcagtaattaggaactcgttgctttca
gctgatggagacaaaagttctgttgttcctcctactccgattgaggttgcagataaaatg
gtaagagaggagcttctacagttgctggagcatgataatgcaaagtatccgcttgatgac
aaagctgagaagaagaaaggagccaagaaccgtaccaaccgttctgcttctcaagttctt
gcaattgacgattttgatgaaaatgagctccaagaggctgacaaaatgataaaggaggag
gggaagtttctgtgtgtgtcaatgggacatgagaacaagacacttgatgattttgtagaa
gctcacaacacatgcgtgaatgatctcatgtatttccccactcgaagcgcttacgagctc
tcaagtgttgctgggaacgcggacaaagttgcagcttttcaggaggagatggagaatgtg
agaaaaaagatggaggaggatgagaagaaggcagaacacatgaaggccaagtacaaaact
tatacaaagggtcatgagaggagggcagagaccgtgtggacccaaatagaggcgacattg
aagcaggctgagattggtggaacagaagtagagtgctttaaagcattgaagaggcaagaa
gagatggctgcatcttttaggaaaaagaatttgcaagaggaagtgataaagcaaaaggaa
acagagagtaaactgcagactcgctatgggaatatgttggcaatggttgaaaaagcagag
gagataatggtcggtttccgagcacaggcattgaagaaacaagaggatgttgaagattct
cacaaactgaaagaagctaagctagccactggagaggaagaggacatagccatagccatg
gaagcttctgcataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (2)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (48)   

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