KEGG   Arabidopsis thaliana (thale cress): AT1G30460
Entry
AT1G30460         CDS       T00041                                 
Symbol
CPSF30
Name
(RefSeq) cleavage and polyadenylation specificity factor 30
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    AT1G30460 (CPSF30)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ath03021]
    AT1G30460 (CPSF30)
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT1G30460 (CPSF30)
Transcription machinery [BR:ath03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     AT1G30460 (CPSF30)
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     AT1G30460 (CPSF30)
SSDB
Motif
Pfam: YTH zf_CCCH_4 Torus zf-CCCH_2 zf-CCCH zf-CCCH_3 zf-CCCH_4
Other DBs
NCBI-GeneID: 839925
NCBI-ProteinID: NP_174334
TAIR: AT1G30460
UniProt: A9LNK9 A0A654EFV1
Structure
Position
1:complement(10770813..10775428)
AA seq 631 aa
MEDADGLSFDFEGGLDSGPVQNTASVPVAPPENSSSAAVNVAPTYDHSSATVAGAGRGRS
FRQTVCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQDCVYKHTNEDIKEC
NMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTTYNYGTNRLYQARNVAPQLQD
RPQGQVPMQGQPQESGNLQQQQQQQPQQSQHQVSQTLIPNPADQTNRTSHPLPQGVNRYF
VVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSR
IGGYIGGGNWKHEHGTAQYGRNFSVKWLKLCELSFHKTRNLRNPYNENLPVKISRDCQEL
EPSVGEQLASLLYLEPDSELMAISIAAEAKREEEKAKGVNPESRAENPDIVPFEDNEEEE
EEEDESEEEEESMAGGPQGRGRGRGIMWPPQMPLGRGIRPMPGMGGFPLGVMGPGDAFPY
GPGGYNGMPDPFGMGPRPFGPYGPRFGGDFRGPVPGMMFPGRPPQQFPHGGYGMMGGGRG
PHMGGMGNAPRGGRPMYYPPATSSARPGPSNRKTPERSDERGVSGDQQNQDASHDMEQFE
VGNSLRNEESESEDEDEAPRRSRHGEGKKRR
NT seq 1896 nt   +upstreamnt  +downstreamnt
atggaggatgctgatggacttagcttcgatttcgaaggcggtcttgattccggacctgtt
cagaacaccgcttccgtcccggttgctccgcctgaaaactcttcctccgccgctgttaac
gtagcaccgacctacgatcattcttccgcgacggtggctggagctgggaggggtagaagt
ttccgtcaaactgtttgtagacactggcttcgaggtctgtgtatgaaaggtgacgcctgt
gggtttctccatcagttcgataaagctcgtatgccgatctgccgttttttccggttatac
ggtgaatgtcgagagcaggattgtgtgtataaacataccaatgaagatatcaaagaatgc
aatatgtacaagctggggttttgtcccaatggtcctgattgtcggtacaggcatgcaaag
cttcctggacctccaccaccagttgaggaagttcttcagaagatacaacaattgacaaca
tacaattatgggacaaataggctctatcaagcaaggaatgttgctccacagctacaagat
agacctcaggggcaagttccaatgcaaggccagccacaagaatcaggtaacttgcagcag
caacaacaacaacaacctcagcaatcacaacaccaggtcagccagactctgataccaaat
cctgctgatcaaacgaacagaacatctcatcctttgcctcaaggggtaaataggtatttt
gtagttaaaagtaacaatcgagaaaattttgaattatctgtgcaacaaggtgtgtgggca
acacaaaggagcaatgaagctaaacttaatgaagctttcgactctgtggaaaatgtgatc
ttgatattttctgtcaaccggacccggcatttccaggggtgtgctaagatgacatcaaga
attggtggttacattggtggaggaaactggaaacatgaacatggaactgcacagtatggc
cggaacttttcagttaaatggttaaagttgtgcgaactatccttccacaaaactcggaat
ttgaggaatccttacaacgaaaacttacctgtgaagataagcagagactgtcaggaatta
gagccctccgttggtgaacaactcgcttctttgctttatcttgaaccagatagcgagctt
atggcaatctccatagctgcagaagcaaaacgagaagaagagaaagcaaagggtgtgaat
ccagagagtagagctgagaacccagacattgtgccgtttgaagacaatgaagaagaggaa
gaggaagaagatgaaagtgaggaggaagaagagagcatggcggggggtcctcaaggcaga
ggaagaggaagaggaataatgtggcctcctcaaatgcctttaggacgcggaatcagaccg
atgcctggaatgggaggtttccctctcggagtaatgggccctggcgatgcatttccctat
gggcctggtggatataatggtatgccagatccatttggcatgggtccaagaccctttgga
ccgtatggaccgaggttcggtggtgatttcagaggaccagtacctgggatgatgtttcct
ggtaggcctccgcaacagtttccacatggcggttatggtatgatgggaggcggacgaggc
ccgcatatgggaggaatgggaaacgctcctagaggagggaggccgatgtattatccacca
gcaacatcatcagcacgacctggcccaagcaaccgaaaaacacctgagagaagcgatgag
agaggagtgtcgggggatcaacaaaatcaggatgcatcacatgacatggagcagttcgag
gttggaaacagtttaagaaacgaagagagtgaaagtgaagacgaagacgaagctccaaga
cgatcaagacatggagaaggaaagaagcgtcggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (6)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
3D Structure (1)   
   PDB (1)   
Protein domain (7)   
   Pfam (7)   
All databases (53)   

Download RDF
DBGET integrated database retrieval system