KEGG   Arabidopsis thaliana (thale cress): AT1G55150
Entry
AT1G55150         CDS       T00041                                 
Symbol
RH20
Name
(RefSeq) DEA(D/H)-box RNA helicase family protein
  KO
K12823  ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT1G55150 (RH20)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ath03041]
    AT1G55150 (RH20)
   03009 Ribosome biogenesis [BR:ath03009]
    AT1G55150 (RH20)
Enzymes [BR:ath01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     AT1G55150 (RH20)
Spliceosome [BR:ath03041]
 Complex A
  U1 snRNP components
   U1 related factors
    AT1G55150 (RH20)
 Complex B
    AT1G55150 (RH20)
Ribosome biogenesis [BR:ath03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    AT1G55150 (RH20)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 841958
NCBI-ProteinID: NP_175911
TAIR: AT1G55150
UniProt: Q9C718 A0A178W6R5
Position
1:20574474..20577351
AA seq 501 aa
MSRYDSRTGDSTSYRDRRSDSGFGGTSSYGSSGSHTSSKKDNDGNESPRKLDLDGLTPFE
KNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFT
EPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAP
TRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESN
NTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLY
NPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQI
TRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYD
FPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQEAGQKVSPELASMGRS
TAPPPPGLGGFRDRGSRRGWS
NT seq 1506 nt   +upstreamnt  +downstreamnt
atgagtcgctacgatagccggaccggcgattccacctcgtaccgtgaccgtcgaagtgac
tcagggtttggtgggacttcatcatatggaagctcaggtagtcatacatctagcaaaaag
gataacgatggcaatgaatctccaaggaagctagatttagatggtttgactccttttgag
aagaatttttatgtcgagtctcccgctgtggcggctatgacagacacagaagtagaggaa
tatcgaaagctaagggaaattactgttgaaggcaaagatattccaaaacctgtcaagagt
tttcgtgatgttggctttcctgattatgttttggaagaggttaagaaggctggttttact
gaacctacgcctatacaatctcaggggtggccaatggctatgaagggacgtgatcttatc
ggcattgctgaaactggttctggaaagactctttcttacttactacctgctattgtccat
gttaatgcccaaccaatgttagctcatggtgacggcccaatcgtcttggttcttgctccc
actcgtgaactggctgtgcagatacagcaagaggcatctaaatttggttcatcctcaaaa
attaagaccacttgcatttatggtggggttccaaaagggcctcaagtgcgtgatctccag
aaaggtgtggagatcgttatagctactcctgggaggttaatagacatgatggagtcgaac
aacacaaacctacgaagggttacttatcttgttttggatgaggctgatcgaatgcttgat
atggggtttgaccctcagatccggaaaattgtttcacatattcggccagaccgtcaaact
ttgtactggagtgccacttggcctaaggaggtggaacaactatcgaagaagtttctttat
aacccatacaaagtgataataggatcttctgatttgaaagctaaccgtgcaattcgtcaa
attgttgatgtcatttccgaaagccaaaagtataacaagttggtgaaactgcttgaggac
ataatggatggaagcagaattcttgtcttcctcgatacaaaaaagggctgtgaccaaatc
actcgtcagcttcgcatggatggttggcctgctttgtcaatacatggagataaaagtcaa
gcggaaagagattgggttctctcggagtttagatcaggcaaaagccctataatgactgct
acagacgttgcagctcgtggattagacgtgaaagatgtgaagtatgtgataaactatgac
ttccctggatcactggaggattatgttcacaggattggacgaacaggtagagccggggct
aaaggaacagcttacactttcttcacagttgcaaatgcgagattcgccaaggaacttacc
aacatactacaagaagctggacagaaagtgagtcccgaattggcttcaatgggtcgcagt
accgctcctcctcctccagggcttggaggattcagagaccgtgggagcagaagagggtgg
agctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (38)   

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