KEGG   Arabidopsis thaliana (thale cress): AT1G55750
Entry
AT1G55750         CDS       T00041                                 
Name
(RefSeq) BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03022  Basal transcription factors
ath03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    AT1G55750
  09124 Replication and repair
   03420 Nucleotide excision repair
    AT1G55750
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ath03021]
    AT1G55750
   03400 DNA repair and recombination proteins [BR:ath03400]
    AT1G55750
Transcription machinery [BR:ath03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     AT1G55750
DNA repair and recombination proteins [BR:ath03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     AT1G55750
SSDB
Motif
Pfam: BSD PH_TFIIH
Other DBs
NCBI-GeneID: 842024
NCBI-ProteinID: NP_001319242
TAIR: AT1G55750
UniProt: Q3ECP0
Position
1:complement(20840091..20845899)
AA seq 591 aa
MAGGQIEKLVKYKSTVKDPGTPGFLRIREGMLLFVPNDPKSDSKLKVLTQNIKSQKYTKE
GSNKPPWLNLTNKQAKSHIFEFENYPDMHACRDFITKALAKCELEPNKSVVSTSSEQLSI
KELELRFKLLRENSELQRLHKQFVESKVLTEDEFWATRKKLLGKDSIRKSKQQLGLKSMM
VSGIKPSTDGRTNRVTFNLTPEIIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEY
LYSTKNTAVAAAEAAEDEELAVFLKPDEILARETRHKIRRVDPTLDMEADQGDDYTHLMD
HGIQRDGTMDVVEPQNDQFKRSLLQDLNRHAAVVLEGRSIDVESEDTRIVAEALTRVKQV
SKADGETTKDANQERLERMSRVAGMEDLQAPQNFPLAPLSIKDPRDYFESQQGNVLNVPR
GAKGLKRNVHEAYGLLKESILEIRATGLSDPLIKPEVSFEVFSSLTRTIATAKNINGKNP
RESFLDRLPKSTKDEVLHHWTSIQELLKHFWSSYPITTTYLHTKVGKLKDAMSNTYSKLE
AMKESVQSDLRHQVSLLVRPMQQALDAAFHHYEVDLQRRTAKSGERPNGYV
NT seq 1776 nt   +upstreamnt  +downstreamnt
atggctggtgggcaaatagagaagctagtcaaatacaagagcactgtcaaggatccagga
actcctggatttctcagaattagagaagggatgttgctcttcgtccctaatgatcccaaa
tcagattctaagctcaaagtacttactcagaacatcaaaagtcaaaaatataccaaagaa
ggatcaaataaacctccttggctcaatctcaccaacaagcaggcaaagagtcatatcttt
gagtttgaaaattatcccgacatgcatgcttgccgtgatttcatcactaaggcccttgct
aaatgtgaattggagcctaataaatccgttgtctcgacatcttccgagcaactcagtatt
aaggaattggagctgcgcttcaagcttctgagagaaaatagtgagctgcagagattgcat
aagcaatttgtggaaagtaaagtactgactgaagatgaattctgggctacaagaaagaaa
ttacttggtaaagattccatcagaaagtcaaaacagcagctcgggcttaagagcatgatg
gtttctggcatcaaaccatctactgatgggcggactaatagagtgacgtttaacttgaca
cctgagataatttttcagatttttgctgagaagccagctgttcggcaggcattcatcaat
tatgttccgagtaagatgacagaaaaagacttctggacaaaatattttagagcagaatat
ctttacagcaccaaaaatacagcagtagctgcagcagaagctgctgaggacgaggaactc
gctgtctttctgaagcctgatgagatattggctcgggaaactcgtcacaagattagacgg
gttgatccaactcttgacatggaggctgaccagggagacgactacactcatcttatggac
cacgggatccagcgtgatggcaccatggatgttgttgaaccacaaaatgatcagtttaaa
cgatcacttttgcaagatcttaatcgtcatgctgctgttgtattggaaggcagaagcatt
gatgttgagtcagaagatacaaggattgttgcagaggctctcacacgggttaaacaagta
agcaaagctgatggtgaaaccaccaaggacgctaatcaggagagattggaaagaatgtcc
cgggtagcaggaatggaggatcttcaagcaccacaaaatttcccattggcgccgctttct
atcaaggatcctcgtgattactttgaatctcaacaaggaaacgtcctcaatgtacccaga
ggagcaaagggcttgaagagaaatgtccatgaagcttatggattactaaaggaatccatt
ttagagattagagctacaggattaagtgatccgttgattaagcctgaagtttctttcgag
gttttcagttcgttaacccgaaccattgcaactgctaaaaatattaatgggaagaaccca
cgagagagctttctggacagattaccaaagtccactaaggatgaagttctacaccattgg
acatcaatacaagaattactgaaacatttttggtcatcttatccgataacaaccacatat
cttcataccaaggttggtaaactgaaggatgcaatgtccaatacatattcaaaacttgag
gcaatgaaagagtcggtgcaatctgatctccggcatcaggtttctctactggttcgtcca
atgcaacaggctcttgacgctgcgttccatcactacgaagtggatctgcagagaagaaca
gctaagagcggcgaaagaccaaacggctacgtatag

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