KEGG   Arabidopsis thaliana (thale cress): AT1G64860
Entry
AT1G64860         CDS       T00041                                 
Symbol
SIGA
Name
(RefSeq) sigma factor A
  KO
K03086  RNA polymerase primary sigma factor
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ath03021]
    AT1G64860 (SIGA)
Transcription machinery [BR:ath03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AT1G64860 (SIGA)
SSDB
Motif
Pfam: Sigma70_r3 Sigma70_r2 Sigma70_r4 HTH_36 PK_C
Other DBs
NCBI-GeneID: 842794
NCBI-ProteinID: NP_176666
TAIR: AT1G64860
UniProt: O24629
Position
1:24097736..24100970
AA seq 502 aa
MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS
FPSSNRHTQSAKALKESVDVASTEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQKS
MLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVKAVSD
VSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAV
SLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGI
EKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGIT
PSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPW
HGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL
VALEKLKHAARKRKMEAMILKN
NT seq 1509 nt   +upstreamnt  +downstreamnt
atggctactgcagctgttataggactcaacactggcaaaagattgttgagttcatcgttt
tatcactcagatgttacagagaagtttctatctgtaaatgatcattgttcatcacagtat
catattgcttcaacgaaaagcgggataactgcgaaaaaggcgtcgaactatagtccgagt
tttccttcgtcgaatcgtcacacacaatctgctaaagctttgaaagagagtgtagatgtt
gcttctactgagaagccatggctacctaatggaactgataaggaattggaagaagaatgt
tatgatgatgatgatctaattagtcattctgttgaggcaattttactgttacagaagtct
atgttagagaaaagttggaatctttcatttgaaaaggcggtgtcgagtgagtatccgggc
aaggggactatacggaagaagaagattccggttatcacctgttcagggatttcagctcgt
caaagaaggattggtgctaagaagaaaactaatatgactcatgttaaagcagtttctgat
gtttctagtggaaagcaagttagaggttatgtgaaaggtgtaataagtgaagatgtgctt
agtcatgtggaagttgtgcgcttgtctaagaaaatcaaatctggtcttcgtcttgatgat
cataagtcaagattgaaggatagattaggctgtgagccttctgatgaacagcttgcagta
tctttgaagatatctcgggccgagcttcaggcgtggttgatggagtgtcatctagctaga
gagaagttggctatgagtaatgtgcgtttggttatgtctattgctcagcgttatgataat
ttgggagcagaaatgtctgaccttgttcagggtggtcttatcggacttttgcggggaata
gagaaatttgattcttccaaaggtttcagaatttcaacttatgtatattggtggattcga
cagggtgtctcaagagcactagtggacaactcaagaaccttgaggttacctactcaccta
catgaaagactcggtttaatccgaaatgcaaagcttagacttcaagagaaaggaatcaca
ccctccattgataggattgcagagtctctaaacatgtcgcagaagaaagttagaaatgca
acagaggctgtaagcaaagtattttctctagacagagatgcatttccttctttgaatggt
ctccctggagaaactcatcacagttacattgcggatactcgtttggagaacaatccgtgg
cacgggtatgatgatttggcactcaaggaggaagtaagcaagcttataagtgcaacactc
ggagaacgggaaaaagagatcattcgattatactatggtctagacaaagaatgtctcaca
tgggaagacattagtaaacggataggattatcgagagagagggtgagacaggtagggctt
gtggcactggagaaactaaaacacgcagcgaggaagagaaaaatggaggcaatgatcctt
aagaattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (2)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (28)   

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