KEGG   Arabidopsis thaliana (thale cress): AT2G28450
Entry
AT2G28450         CDS       T00041                                 
Name
(RefSeq) zinc finger (CCCH-type) family protein
  KO
K15332  tRNA (uracil-5-)-methyltransferase [EC:2.1.1.-]
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ath03016]
    AT2G28450
Transfer RNA biogenesis [BR:ath03016]
 Eukaryotic type
  tRNA modification factors
   Methyltransferases
    AT2G28450
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 zf-CCCH Methyltransf_25 Methyltransf_4 MTS Methyltransf_15 RRM_1 Ubie_methyltran Methyltransf_11 PCMT AviRa Methyltransf_32 Torus PrmA fvmYukDl_N SUN SKA1
Other DBs
NCBI-GeneID: 817393
NCBI-ProteinID: NP_180412
TAIR: AT2G28450
UniProt: Q8L7S3
Position
2:complement(12162051..12166039)
AA seq 809 aa
METSSIEINELPLATKTQTPPASVEPIPMETSSIDELPSSDSNATDNIEAVGEKRKRADE
DEKTNLESSDTKITTPSPWWKTSLCSYFRREASCSHGNECKYAHGEAELRMKPDNTWDPT
SERGKKAKAMKMSEHEEKEEDEVLFTEQMMESIDGDEGGGGSVSVVDLSLSKCLVHLPNK
WQSDELKKFLGEQGVLYKSAKKRRGMIVGFVTFENAEQLQSGVEILDGKTVNSSNLKIAD
VLPRTFDKNDARKSVKSARDAVTPLAYLSYADQLEQKKTSIGQMLKKLARNARKACPNGN
SLPQWVLTSRDRGGLACNLEGIIESPITNGYRNKCEFSVGLSLQGKPTVGFSLGSFCAGV
TAVEEPVDCPNVSKIASQYASIFQKFIENSKFQVWNRFQHSGFWRQLTVREGRKPGVFSN
DEDAITRIAEVMLMVQVCLTGSDEAEVATEFEELAKAFAEGARASSPTLPLTVLVVQNHS
GISNVAPPDAPLQVLAIPISDNGTDQEQTTNVLTEARIHDHINNLRFSISPTAFFQVNTV
TAEKLYSIAGDWADLGPDTLLFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVADAERNAT
INGISNCKFICSKAEDVMSSLLKQYLDVTQMEEAKPLSNANDDLNKQIPSTEEMTNSEHV
ADQNLPPSNTQVEELQDNEQKDSSSLEPEKTTKPQFKNVVAIVDPPRSGLHPAVIKALRT
HPRLKRLVYISCNPETLVANAIELCTPSFDEPDRGNKNYRGRKKIGIAALARHRAKSMPT
SEAFRPVKAMAVDLFPHTDHCEMVMLLER
NT seq 2430 nt   +upstreamnt  +downstreamnt
atggaaacatcatcaatcgaaatcaacgagcttccattagccaccaaaacccaaacacct
cctgcttccgtcgagccaattccaatggagacatcatcaatcgacgagcttccatcgtcc
gattcgaatgcaacggataacattgaagctgttggtgagaaacggaaacgcgccgatgaa
gacgagaaaaccaatctcgaatcgtcagacacgaagattactactccttcaccgtggtgg
aagacgagtctctgttcttactttaggcgtgaggcttcgtgtagtcatggaaacgaatgt
aaatacgctcacggtgaagcggagctccggatgaaaccggataatacttgggatccgact
tctgagcgtggaaagaaagccaaggctatgaagatgtctgagcatgaagagaaagaagaa
gacgaggttttgtttactgagcagatgatggaatcaattgatggtgatgaaggaggtggt
ggtagtgttagtgttgttgatttgtcactaagtaaatgtttggtgcatttacctaataaa
tggcaatctgatgaattgaagaaatttttaggagaacagggagttctatataagtctgca
aagaaaagaagaggaatgattgttggttttgttacatttgagaatgcagaacaattgcag
agtggcgtggagattttggatggaaaaactgttaatagcagtaatttgaagattgctgat
gttcttccgcgtacatttgacaagaatgatgcaagaaaatcggttaaaagtgctcgtgac
gctgtgactcccttggcttacttgtcttatgctgaccagcttgaacaaaaaaagacttct
ataggccaaatgctgaaaaaacttgcgaggaatgcgcgtaaagcttgtccaaatgggaat
tcacttccacaatgggtccttacatcgagagacagaggtggtcttgcatgcaacctcgag
ggcattatagaatcaccgattacaaatggctacaggaacaagtgtgagttctcggttgga
ttatctcttcaggggaagccaactgttggattcagtctaggaagtttttgtgcgggtgtg
acagcagtcgaggagcctgtggattgccccaacgtctccaaaattgcttctcaatatgct
tcaatatttcagaagtttatagaaaattcaaaattccaagtttggaataggtttcaacat
agtgggttctggcggcaattgacggttcgagaggggagaaaacccggcgtgttttcaaat
gatgaagatgctattacaagaatcgcggaggttatgcttatggttcaggtttgtttaact
ggttctgatgaggcagaagtggccactgagtttgaagaattggcgaaagcgtttgctgaa
ggagctagagcaagctctcctactcttcctctgactgtattagttgttcagaatcactca
ggaatatcaaatgttgcaccacctgatgctccactgcaagtgctggctattccaatttca
gataatgggacagatcaggagcaaaccaccaatgtcttgactgaagctcggattcatgat
cacattaacaaccttcggttcagcatatccccaacagcattttttcaggttaataccgtc
accgcagagaagttatactcaattgctggagactgggctgaccttggtcccgacactttg
ctcttcgatgtatgctgtggaactggaacaattgggcttacactggcacatcgtgttggc
atggtaattggcatagaaatgaatgcttcggctgtagcagatgccgaacggaatgcaacg
atcaatggcataagcaactgcaagttcatctgctcaaaggcagaggatgttatgagctct
ctacttaaacagtacctagatgtgactcaaatggaagaagctaagcctctaagtaatgct
aacgatgatctcaacaaacaaattccctcaacagaagaaatgacaaactcagagcatgta
gctgatcaaaacctacctccttcaaacactcaagtggaagaacttcaagacaatgagcag
aaggattcctcgtccttagaaccggaaaaaactacaaaaccacagttcaaaaatgtggtt
gctatagtcgatccacctcgctctggacttcatccagctgtaatcaaagctctaagaacc
catccccggttaaagagacttgtgtacatttcgtgcaaccctgaaacgctagtggcaaac
gcgatagagctttgcacgccatcttttgatgaaccggatagaggaaacaaaaattacaga
gggcgcaagaaaataggcattgccgctttggctcgacatagagccaagtcaatgccaact
tctgaggcttttagacctgtcaaagcaatggccgttgaccttttcccccacactgaccac
tgcgaaatggtaatgctccttgagaggtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (18)   
   Pfam (18)   
All databases (51)   

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