KEGG   Arabidopsis thaliana (thale cress): AT2G47680
Entry
AT2G47680         CDS       T00041                                 
Name
(RefSeq) zinc finger (CCCH type) helicase family protein
Organism
ath  Arabidopsis thaliana (thale cress)
SSDB
Motif
Pfam: Helicase_C DEAD zf_CCCH_4 zf-CCCH zf-CCCH_4 AAA_22 Torus zf-CCCH_2 ATPase AAA_19 AAA nSTAND3 TniB Cag12 BMT5-like AAA_16
Other DBs
NCBI-GeneID: 819381
NCBI-ProteinID: NP_182290
TAIR: AT2G47680
UniProt: O22243
Position
2:complement(19545656..19551171)
AA seq 1015 aa
MAVSSPTSSSSSSESLPLPSSNFASLPIMAMKRRIIDKILENRVTLIVGEPGCGKSSQVP
QFLLEANMAPILCTQPRRFAVVAVAKMVAKSRNSDLGGEIGYHIGHSKILTEGSKILFKT
AGVLLDEMLDKGLNALKYKVIILDEVHERSVESDLVLVCVKQFLMKNNDLRVVLMSATAD
ITRYRDYFKELGRGERVEVVAIPSPDQRTIFQRRVLYLEQVAGLLGVSSDLSAYCPGPSP
SSADTEIKPELQNLIHDLILYIHEKEPDIEKSILVFLPTYYSLEQQYHQLEPFFASFEVH
ILHRSIDTEQALAAMKICRSRRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDPSRKR
DAVQLVWVSRSQAEQRRGRTGRTCDGEVYRLVPSAFFNKLEEHEPPSILKLSLRQQVLHI
CCTESRAINDANALLAKAMDPPDPDVVDDALRMLLSIQALRKSPRGRYEPTFYGRLLASF
PLSFDASILVVKFGEMGMLRQGILLGVLMDTLPLPIHHPFGDDSLFLEYVDHYFGGSKTI
SGGRREMVLMANFCAFQFWQRVFKDKHRLENLKQLLSKEKDKDLKLMFPEIEKEWCDFHN
IAQSSFYHVSELYEDTLSSFHRFRPQFISSSDSQPTYYNPYEFDHTCYIECQPSEDKYLH
SEDVDNNQPPPEVRKCVSVPFVPPNAFQANAIAENMASIIKEIRTQCTPSESDNGHGALE
PEDYVEYGEAPVCVYFLNGYCNRGGQCTFTHTLQSTRPACKFFASSQGCRNGESCLFSHA
MRRRTTSYLPPPQCLPEEDGSSTSPLLDLFPTSSEGCILVFDDSDMHFTSSIANRYPSWR
ILSTSSSSETLFCDSSLADTRIFWGLNHPYQTIISKAGRENPIPWNEVKCVLWFLNPDSY
ADTPEKQKTILQNFFEHMAIRLLGDKLYKIRVVLTMNNVRFSLLQVEKLARESFFFLGES
FPHDSESFGAFQDTLTIQKPMLVSRPISYVFNLHPPSDIQFGNYTSLLRKSLHNK
NT seq 3048 nt   +upstreamnt  +downstreamnt
atggcggtttcttcgccgacttcgtcttccagctcttctgaatcgttacctttaccctcc
tccaacttcgcttcgcttccgattatggcgatgaaaaggagaatcatcgacaaaatcctc
gagaatcgcgtcactctcatcgtcggcgagcctggatgcgggaagagttcacaagttcca
cagttccttctggaagcaaacatggctcccattttgtgtacacagcctaggagatttgcg
gttgtagctgttgctaagatggttgctaaatctcgcaactccgatttaggtggagaaatt
ggttaccacattgggcattctaagattttgaccgaagggtcgaaaattctgttcaaaact
gctggagttctgttggatgaaatgctagacaaggggttgaatgcactaaagtacaaggtt
atcattcttgatgaagtgcatgaaagatctgtggagtcagatcttgttcttgtctgtgtt
aagcagtttctcatgaagaataatgacctcagggtggtcttgatgtctgcaactgctgat
ataacaaggtacagagactactttaaagaactaggcaggggtgaacgcgtagaagtagtt
gctattcctagccctgaccagagaacaattttccagcgaagagtattatatcttgagcag
gttgcaggattgcttggtgtgagttctgatttgtcagcttactgtcctggtccaagtcct
tcttcagctgatactgaaatcaaacctgaactgcaaaatcttattcatgatcttatctta
tatattcatgaaaaagaaccagacattgagaagagtattttggttttccttccgacatac
tactcccttgagcagcagtatcatcaattggaacccttttttgcatcttttgaggttcac
atattgcaccgaagcattgacaccgagcaagccttggcggctatgaagatatgcagatcc
cgccgcaaggtaatattggctacaaacattgcggaatcttcggtaacaatacccaaagta
gcatatgtcattgactcgtgccggtctctgcaagtgttctgggatccgtccagaaaaaga
gacgcagtacagcttgtttgggtctctagatctcaggctgagcaacgtagagggaggaca
ggtcgaacatgtgatggtgaggtgtatcgcctggtgccgagtgcattttttaacaagctt
gaagaacatgagcccccatctatacttaagctgtcattgagacaacaagttctccatatt
tgctgcacggaatccagagccattaatgacgcaaatgcattgctggcaaaagctatggat
ccaccagacccagatgtcgttgacgatgcattaaggatgctgttaagcatacaagcattg
cggaaatcgcctaggggacgttacgagcccacattttatggacggttgcttgctagcttc
ccattgtcctttgatgcatctattctggtcgtcaagtttggtgaaatgggaatgctaaga
caagggattctattaggtgtcctgatggataccctaccacttcctatccatcatcctttt
ggagatgattcactgtttctagagtatgttgaccactattttggtggcagcaagaccatt
tctggtgggcggagggagatggtactcatggcaaacttttgtgcttttcagttttggcaa
cgtgtctttaaggataagcatcgtcttgaaaacttgaaacaactcctgtcaaaagagaaa
gacaaagatctcaagttgatgtttcctgagattgagaaagagtggtgtgatttccacaat
attgcccagtcctcgttctatcatgtgtctgagctgtatgaagatacacttagctcattt
catcgttttagacctcaattcatcagttcctctgattctcaaccaacctattacaatcca
tatgaatttgatcatacatgctatattgagtgccaaccctctgaagataaatatctacac
tctgaggacgtagataacaatcaaccacctcctgaagtaagaaaatgtgtatcagtgccg
tttgttcctcctaacgcattccaagcaaatgctattgcagaaaacatggccagtattatc
aaagagataagaactcaatgcacaccatctgaatctgataatggccatggagcactcgaa
cctgaggattacgttgagtatggagaggccccagtctgtgtatattttcttaatggatat
tgtaaccgtggtggccagtgcacgttcactcatactcttcagtcaacaagaccagcctgc
aaatttttcgcatcatcgcagggatgtcgaaatggagaatcgtgtttgttttcccacgcc
atgcgacgacggacaacatcataccttccacctccccaatgccttccagaagaagatggc
tcttccacatcgccccttctggatttgtttcctacttcttctgagggatgtatccttgtg
ttcgatgactctgacatgcatttcacctcaagtatagccaaccgttatccgtcctggaga
atactctcaacatcatcgtcttcagagacgcttttctgtgattcatcacttgcagacaca
agaatcttctggggtctcaatcatccctaccagacaatcatctcaaaagcaggaagggag
aacccaatcccgtggaacgaagtgaaatgcgtgctgtggttccttaacccagacagctat
gctgatactcctgagaagcagaaaactattctgcagaatttcttcgagcacatggcaatc
agattactcggcgataagctttacaaaatccgagtagttctcacaatgaacaacgtcaga
ttctcactcttacaggttgagaagctagccagagaaagcttcttcttccttggagagtct
ttcccacacgattcagaaagctttggtgcattccaagacacattaacaatccagaagcct
atgctagtctccagaccaatctcctatgtctttaatctccatccgccttctgacatccag
tttggtaactacacctctcttcttcgcaaatctcttcacaacaaatga

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   RefGene (35)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (16)   
   Pfam (16)   
All databases (62)   

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