KEGG   Arabidopsis thaliana (thale cress): AT3G01610
Entry
AT3G01610         CDS       T00041                                 
Symbol
CDC48C
Name
(RefSeq) cell division cycle 48C
  KO
K14571  ribosome biogenesis ATPase
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    AT3G01610 (CDC48C)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ath03009]
    AT3G01610 (CDC48C)
Ribosome biogenesis [BR:ath03009]
 Eukaryotic type
  Pre-60S particles
   Other pre-60S particles
    AT3G01610 (CDC48C)
SSDB
Motif
Pfam: AAA AAA_lid_3 RuvB_N AAA_5 TIP49 AAA_22 AAA_2 AAA_16 RNA_helicase AAA_14 AAA_17 AAA_28 AAA_18 IstB_IS21 nSTAND3 AAA_33 ATPase_2 Mg_chelatase Viral_helicase1 Parvo_NS1 Zeta_toxin Bac_DnaA NB-ARC AAA_3 Cytidylate_kin2 TsaE AAA_11 SR-25 Zot CobT
Other DBs
NCBI-GeneID: 821105
NCBI-ProteinID: NP_186810
TAIR: AT3G01610
UniProt: Q9SS94 A0A178V5U0
Position
3:231610..235279
AA seq 820 aa
MGRRGRGGGGGMGGGINRRYLSQVMDTCGKDLSTAEDIVDDLRSRYGNFARLTRQVLLLN
VRQVLNVRNNKRVKDEDEDDNIGDEEGSASQRKKQRRVDEKEEKLQRAEQSHLRKRNMER
SVSSSPSSSSSSEDSGDVSTSEDAVYGEKLSPPRFDLINDSLRDNYAKLNSSSKKPIGSP
AEKNVEVETVSNKGRSKLATMGARKEAKVSLSLSGATGNGDLEVEGTKGPTFKDFGGIKK
ILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTKLANAIANEAGVPFYKISA
TEVISGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIGSKRENQQREMEKRIVTQLLTC
MDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRRSGRFETEIALTAPDEDARAEIL
SVVAQKLRLEGPFDKKRIARLTPGFVGADLESVAYLAGRKAIKRILDSRKSEQSGDGEDD
KSWLRMPWPEEELEKLFVKMSDFEEAVNLVQASLTREGFSIVPDVKWDDVGGLDHLRLQF
NRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIAKAAANEAGANFMHIKGAELLN
KYVGESELAIRTLFQRARTCAPCVIFFDEVDALTTSRGKEGAWVVERLLNQFLVELDGGE
RRNVYVIGATNRPDVVDPAFLRPGRFGNLLYVPLPNADERASILKAIARKKPIDPSVDLD
GIAKNNCEGFSGADLAHLVQKATFQAVEEMIGSSESSEDDVTDITQCTIKTRHFEQALSL
VSPSVNKQQRRHYDALSTKLQESVGRNTEQVTIGPSFTLE
NT seq 2463 nt   +upstreamnt  +downstreamnt
atggggaggagaggtcgcggcggcggcggtggtatgggcggaggaatcaatcgtagatat
ctgagtcaagttatggatacgtgcggcaaggatttatctacggcggaggacatcgttgat
gatcttcgttccaggtacggcaattttgcgaggttgactcggcaagtgcttctactcaat
gtcaggcaagtccttaatgttagaaacaacaagagggttaaagacgaagatgaagatgac
aacattggagatgaggaaggttctgcttctcagaggaagaaacagagacgggttgatgag
aaagaggagaaattgcagcgagcggagcagtcgcatttaaggaagaggaatatggaacgt
tcagtgtcttcttctccgtcttcttcttcttcttcggaagacagtggtgatgtgtcgact
tctgaggacgcggtttatggcgagaagctgagtccgccgcggtttgatctgatcaatgac
agtctaagagataactacgctaagttgaacagctcctcgaagaaaccaattgggtcgcct
gcggaaaagaatgtggaagttgagactgtgagcaacaaaggtagaagcaagttggctaca
atgggggccagaaaggaggctaaagtttctctttccctcagtggagctactggtaatggt
gatttggaagttgagggtactaaaggacctacttttaaagactttggtgggattaagaaa
atattggatgaattggagatgaatgttctattccccattctcaatcctgagccgtttaag
aagattggagtgaagccaccaagtgggattctatttcatggaccacctggctgtgggaag
actaagttggccaatgccattgccaatgaagctggtgttccgttttataagatttcagcc
acagaggtgatttctggtgtttctggtgcttctgaagagaatatcagagagctcttttct
aaagcatataggactgcgccttcgattgtgtttatcgatgagattgatgcgattggttca
aagagagagaatcagcaaagagagatggagaagcggatagtaacacaattgttgacttgt
atggatggacctggtaacaaaggcgataaaaatgctcctgattctagtgctggttttgtt
cttgtcattggagctacaaataggcctgatgctcttgatcctgctttgaggagaagtgga
cgatttgaaactgagatcgctctaactgctccagatgaagacgcaagggctgagatactc
tctgttgtagcccaaaaacttagattagaaggaccctttgacaagaaaagaatagctcgt
ttaacaccgggttttgttggagctgatttggagagtgttgcttacttggctggcaggaaa
gccattaagagaatcttggattcaaggaaatctgaacagtctggggacggtgaagacgat
aaatcttggctgaggatgccctggccagaagaagagttggaaaagctctttgtcaaaatg
tctgatttcgaggaagcagtgaatctagttcaggcatctttaacaagagaaggattctct
atcgtgcctgatgtcaagtgggatgatgttggtggacttgaccatctacgacttcaattc
aaccgttatatagtgaggcctatcaaaaagcctgatatttataaggcttttggggtagac
ttagagacagggtttttgctctatggaccaccgggttgtggcaagacattgattgcaaag
gcagctgctaacgaggctggagctaatttcatgcacatcaagggtgccgaacttctaaat
aaatacgttggagaaagtgagcttgctattcgtacgttgtttcagcgagctcggacatgt
gcaccatgtgtaatcttctttgatgaggtggatgctttgacaacaagtcgtggcaaagaa
ggtgcttgggttgttgaacggcttttgaaccagtttcttgttgagctggatggtggagag
aggcgtaatgtatatgtaattggagctacaaacaggccagatgtagttgatcctgctttc
ttgagaccgggtagatttgggaatcttctttatgtacccctccccaacgcagatgagcgt
gcttcaattctaaaagctattgcaaggaagaaaccgatagatcctagtgttgatctggat
ggaattgcaaagaataactgtgaaggtttcagcggagctgatctcgcacacttggtgcaa
aaagctacattccaagcagtggaggagatgataggctccagtgagtcgtctgaagatgat
gttacagatataacgcagtgtacaatcaagacgaggcatttcgagcaagccttgtcctta
gtctcaccatctgtgaacaaacagcaaagaagacactatgacgcactatcaacaaagctt
caagaaagcgttgggaggaacactgaacaagtcaccatagggccatcttttaccctcgag
taa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (30)   
   Pfam (30)   
All databases (63)   

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