KEGG   Arabidopsis thaliana (thale cress): AT3G07610
Entry
AT3G07610         CDS       T00041                                 
Symbol
IBM1
Name
(RefSeq) Transcription factor jumonji (jmjC) domain-containing protein
  KO
K15601  [histone H3]-dimethyl-L-lysine9 demethylase [EC:1.14.11.65]
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ath03036]
    AT3G07610 (IBM1)
Enzymes [BR:ath01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.65  [histone H3]-dimethyl-L-lysine9 demethylase
     AT3G07610 (IBM1)
Chromosome and associated proteins [BR:ath03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    AT3G07610 (IBM1)
SSDB
Motif
Pfam: JmjC
Other DBs
NCBI-GeneID: 819952
NCBI-ProteinID: NP_187418
TAIR: AT3G07610
UniProt: Q9SSE9
Position
3:2425884..2433113
AA seq 1027 aa
MDSVEEEGVVRVEEENGRGGLRRHRRVSTKLANYVDPPTDDEEDGGPKRKGKRGGNRAPK
KTPKKDEEMQKNEIDEANRVTGLVKEKRAATKILNRKDSIIEVGEASGSMPKEVKGIRIG
KRKGEIDGEIPTKPGKKPKTTVDPRIIGYRPDNMCHQCQKSDRIVERCQTCNSKRYCHPC
LDTWYPLIAKEDVAKKCMFCSSTCNCRACLRLDTKLKGINSNLIVSEEEKVQASKFILQS
LLPHLKGINDEQVAEKEVEAKIYGLKFEEVRPQDAKAFPDERLYCDICKTSIYDLHRNCK
SCSFDICLSCCLEIRNGKALACKEDVSWNYINRGLEYEHGQEGKVIEKPANKLDDKLKDK
LDGKPDDKPKGKPKGRPKGKPDDKPKGKLKGKQDDKPDDKPDEKPVNTDHMKYPSLWKAN
EAGIITCCCGAGELVLKRLLPDGWISELVNRVEKTAEAGELLNLPETVLERCPCSNSDRH
IDIDSCNLLKAACREGSEDNYLYSPSVWDVQQDDLKHFQHHWVKGEPVIVRNVLEATSGL
SWEPMVMHRACRQISHVQHGSLKDVVAVDCLDFCEVKVNLHEFFTGYTDGRYDRMGWPLV
LKLKDWPPAKVFKDNLPRHAEEFLCSLPLKHYTHPVNGPLNLAVKLPQNCLKPDMGPKTY
VASGFAQELGRGDSVTKLHCDMSDAVNILTHISEVPNMQPGIGNLKKKHAEQDLKELYSS
VANKEEMMEILENSRQQVQNVETDDGALWDIFRREDIPKLESYIEKHHKEFRHLYCCPVS
QVVHPIHDQNFYLTRYHIMKLKEEYGIEPWTFNQKLGDAVLIPVGCPHQVRNLKSCNKVA
LDFVSPENVSECLRLTKQYRLLPPNHFAKEDKLGVKKMIVHAVDKALRDLSGEKSPEPEE
KKQNMRGPKKGAAKAVAKALKDLSPSEKKSSEAAEEEISNGIVNAIDKGLKDLPPSEEKS
SEAKVEISNGIVSAMDKDLEHISSSEKKSTEEEGVKRPNIVRTYERRKKLGSEVTNAYID
RLEMEKM
NT seq 3084 nt   +upstreamnt  +downstreamnt
atggattctgtggaggaagaaggtgttgttagggttgaagaagagaacggacgcggtggt
ctccgtaggcatcggagggtttctacgaagctggcgaattacgtagatcctccgactgac
gacgaagaagatggaggacccaagcgaaagggcaaaaggggtggaaatagggctccgaaa
aagacaccgaagaaagacgaggagatgcaaaagaacgaaattgatgaagcaaaccgagtc
actggtctggtgaaggaaaaaagagccgcgactaagattctgaatcgcaaagactccatt
attgaagtaggagaagcttctggaagcatgcccaaggaagtaaagggaattaggattggg
aaaaggaagggagaaatcgatggtgagattccaactaagccgggcaagaagccaaagact
acagtagacccgagaatcattggttacagaccggacaatatgtgccatcaatgtcaaaag
agcgataggattgttgaacggtgtcagacctgcaatagtaagcgttattgtcatccatgc
ttggacacttggtacccccttatagcaaaagaagatgttgccaagaaatgcatgttctgc
tctagtacttgcaattgcagagcatgcttgcgtctagatactaaattgaaagggataaat
tcgaacctcatagtcagcgaggaagaaaaggtccaagcctctaagtttattctgcagagc
cttctcccacatctgaaaggaataaatgatgaacaagttgctgagaaggaagttgaggcc
aaaatatacggactgaagtttgaagaggtgaggccccaagacgctaaagctttccctgat
gaaagactatactgtgatatctgcaagacttctatctatgatctccataggaattgcaag
tcctgtagttttgatatctgccttagctgttgccttgagatccgcaatggaaaggctctg
gcatgtaaggaggatgtgtcttggaattatattaaccgaggtttagagtatgaacatgga
caagaaggaaaagtgattgaaaagccggcgaataagctagatgataagttgaaagataag
ctggatggtaagccggatgataagccgaagggtaagccaaagggtaggccaaagggtaag
ccggatgataagccgaagggtaaactgaagggtaagcaggatgataaaccggatgataag
ccagatgagaagccggttaatacagaccatatgaagtacccttctctgtggaaagcaaat
gaagctgggatcattacttgttgttgtggtgctggggagttagtgctgaaacgactactt
ccggatggttggatatctgagttggtcaacagagttgaaaaaactgctgaagctggcgag
cttttgaatttacctgaaacggttttggagcgatgcccttgttctaactctgacagacat
attgacatagacagctgtaatttgttaaaagctgcttgtcgagaaggttcagaagacaat
tatctttactctccaagtgtatgggatgttcaacaagatgatttgaagcattttcagcac
cattgggtaaaaggcgagcctgtgattgtgagaaatgtgcttgaagctacatctggttta
agctgggaaccaatggtaatgcatcgtgcctgccgccagataagccatgtccagcatgga
tcacttaaggatgttgttgctgttgattgtttggacttctgtgaggtaaaagttaatctt
catgaattttttactggatacacggatggccgatatgatcgaatgggttggccactagtt
ctgaaactgaaagattggcctccagctaaagtcttcaaagataacttgccacgtcatgct
gaggagttcttatgtagtttgcctttgaagcattacactcatccggttaatggacctttg
aatctcgctgtcaagcttccccaaaattgcttgaagccagacatgggaccaaagacgtac
gttgcttctggatttgctcaagaattaggccgtggagattctgttactaagctccactgc
gacatgtctgatgcggtgaatattttgacgcacatatctgaagtgcccaatatgcaacct
ggaattggaaatctgaaaaagaagcatgccgaacaagatctcaaggagctgtatagctca
gtagctaacaaggaggaaatgatggagattcttgaaaattccagacaacaagtccaaaat
gttgaaactgatgatggagctctttgggacattttccgtagagaagatattcctaaatta
gaaagttacattgagaaacatcacaaggagttcagacatctctactgctgtcctgtgtct
caggttgttcatcctatacatgaccagaacttctatctgacgcggtatcatataatgaag
ctgaaagaagaatatggcattgaaccttggaccttcaatcagaagcttggtgatgctgtt
ttgatacctgtaggttgccctcatcaagttagaaatttgaagtcctgcaataaggtagcg
cttgacttcgtctcacctgaaaatgtcagcgagtgtttacgcttgacaaaacagtatcgt
ctacttccaccaaatcattttgcaaaagaagacaagttaggggttaagaagatgatagtc
catgcagttgataaagctctcagagacttaagtggagagaagtctccagaacctgaagag
aagaaacaaaatatgagagggccgaagaagggggcagccaaggcagttgccaaggctctc
aaagacttatctccaagtgaaaagaagtcttcggaagcagctgaagaggagatatcaaat
gggatagtcaatgcaatcgataagggtctcaaagacttacctccaagtgaagagaagtct
tccgaagccaaagtggagatatcaaatgggatagtcagtgcaatggataaggatctcgaa
cacatatcttcaagcgaaaagaagtctacggaagaggaaggggtgaaaagaccaaatatt
gtgaggacatatgagcggagaaaaaagctgggaagtgaagtaaccaacgcatacattgac
agattagaaatggagaagatgtag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (61)   
   KEGG ORTHOLOGY (1)   
   RefGene (50)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (5)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (1)   
   Pfam (1)   
All databases (75)   

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