KEGG   Arabidopsis thaliana (thale cress): AT3G19760
Entry
AT3G19760         CDS       T00041                                 
Symbol
EIF4A-III
Name
(RefSeq) eukaryotic initiation factor 4A-III
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03013  Nucleocytoplasmic transport
ath03015  mRNA surveillance pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT3G19760 (EIF4A-III)
  09122 Translation
   03013 Nucleocytoplasmic transport
    AT3G19760 (EIF4A-III)
   03015 mRNA surveillance pathway
    AT3G19760 (EIF4A-III)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT3G19760 (EIF4A-III)
   03041 Spliceosome [BR:ath03041]
    AT3G19760 (EIF4A-III)
   03009 Ribosome biogenesis [BR:ath03009]
    AT3G19760 (EIF4A-III)
   03012 Translation factors [BR:ath03012]
    AT3G19760 (EIF4A-III)
Enzymes [BR:ath01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     AT3G19760 (EIF4A-III)
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     AT3G19760 (EIF4A-III)
   mRNA cycle factors
    Stress granule specific factors
     AT3G19760 (EIF4A-III)
Spliceosome [BR:ath03041]
 Complex C
  Other components
   EJC/TREX
    AT3G19760 (EIF4A-III)
Ribosome biogenesis [BR:ath03009]
 Eukaryotic type
  90S particles
   Helicases
    AT3G19760 (EIF4A-III)
Translation factors [BR:ath03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    AT3G19760 (EIF4A-III)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_30 CMS1 AAA_22 Flavi_DEAD Helicase_RecD
Other DBs
NCBI-GeneID: 821513
NCBI-ProteinID: NP_188610
TAIR: AT3G19760
UniProt: Q94A52 A0A5S9XDT0
Position
3:6863661..6866646
AA seq 408 aa
MATANPGRGGGRRGGGAMDDDKLVFETTDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSA
IQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTE
KTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKL
LILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKR
DELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFT
VSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIH
RIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq 1227 nt   +upstreamnt  +downstreamnt
atggcgacagcgaatcctggccgtggaggtggtagaagaggcggtggagctatggatgac
gataagttggtcttcgagactaccgatggaattgagcccatcacgagcttcaatgatatg
ggcattaaggaagatgtgcttcgcggtgtctacgaatatggattcgagaagccttccgcg
attcagcagagggctgttatgccgattcttcaaggacgtgatgttattgctcaagctcag
tccggtaccgggaagacatctatgattgctctctccgtttgtcaagtcgttgatacttct
tctagagaggttcaggccttgatattatccccaacaagagagctggctacacaaacagag
aagacgatacaagctattggattacatgccaatattcaggcacatgcttgcatcggtggg
aatagtgttggagaagacatcaggaagctggagcatggtgttcatgttgtgtctgggaca
cctggtcgtgtctgtgacatgataaagaggagaagtcttcgtaccagagctattaaactt
ctgattcttgatgaatcagatgaaatgctgagcagagggttcaaggaccagatctatgat
gtttacagatatcttccaccagatcttcaggtttgcttggtttctgcaactcttcctcac
gagattttggagatgacatccaagtttatgacagaaccagtgaagatacttgtgaagcgt
gatgagttgactcttgaaggaatcaaacaattttttgttgctgttgagaaggaagagtgg
aaatttgatacactctgtgatctttatgacacgcttactatcactcaagctgttatcttc
tgcaatactaaacgaaaggtggattatcttagtgagaaaatgagaagtcacaacttcact
gtctcatcaatgcatggagacatgcctcagaaggagagagacgccatcatgaatgagttt
cggtcaggtgatagtcgtgttttgataacaacagatgtatgggcacgtgggattgatgtg
caacaagtttctcttgttatcaattatgatctccccaacaaccgtgagctctacatccat
cgtattgggcggtctggtcgattcgggcgtaagggtgttgcaatcaactttgttaaaagc
gacgacatcaagattctcagagacattgagcagtactacagtacccagattgatgagatg
ccaatgaatgtagctgatcttatctaa

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (62)   
   KEGG ORTHOLOGY (1)   
   RefGene (54)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (2)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (86)   

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