KEGG   Arabidopsis thaliana (thale cress): AT3G27700
Entry
AT3G27700         CDS       T00041                                 
Name
(RefSeq) zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
  KO
K13192  RNA-binding protein 26
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ath01009]
    AT3G27700
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT3G27700
   03041 Spliceosome [BR:ath03041]
    AT3G27700
Protein phosphatases and associated proteins [BR:ath01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     AT3G27700
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     AT3G27700
Spliceosome [BR:ath03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA binding proteins (RBPs)
    AT3G27700
SSDB
Motif
Pfam: RRM_1 Nup35_RRM_2 Nup35_RRM zf_CCCH_4 zf-CCCH
Other DBs
NCBI-GeneID: 822392
NCBI-ProteinID: NP_189407
TAIR: AT3G27700
UniProt: Q9LVX1 A0A384KQQ5 C0SVD1
Position
3:complement(10256895..10261975)
AA seq 908 aa
MELSVSSPKQSVLSPPDCMSDPEEEHEISEEEDDDRNHKHRRKEETRSQSLEQDSSDQAF
SRPYRKNYRHYENGNSFSEHEKRSFGTGSGQRVQFDNQRMRSNPMFSRDSGPGRGRGNYG
SWAQRDSRFNPVDLSSHMVQVGSMGQGMFGGRGLAGVSAAQSAPWPPFGMIPGVPNGGLD
GFHHLQGSLRPPLNAPLNMGIPRQRCRDFEERGFCLRGDMCPMEHGMNRIVVDDVQSLSQ
FNLPVSVPGAPHLAASSKQVPAQFGGASFMNPKGAHGRTNEGGMAVDGLGYGDAYPSAGG
TDFYDPDQPLWNNSTGETSGAISTLNSHGVDENVAPLDDSNQDAAENGCGIRDSRSTSQS
VWGRMKGSNSQANSKEKADAVLNSSAVPEDQLKEVSVNSSRHGKQNHVGESVAKVVDSSN
ISNDMMNNTRKPTQKAMRTLFVNYVPHESNRRDLILAHFQKFGKVIDIHIPVNSERAFVQ
FSKREEAESALRAPDAVMGNRFIKLWWANRDSIPDNGLSTGSGASMKGRSMTASGAQNQF
PIAAASKSNHVSSIAKVPTFQTGGAPSSSEQPKPVVVTTSGPKVTPLQQKKADTLERLKE
TLRKKQEMLEQKRNEYRKKLATLEKQGTVVKREEADEPDAKRVKLDTASDSGAAIASPKT
ESSTDKKVPILKPLSTAKLSTETPSPDSKNFKQRPYSFTTSLNAPMVNRYKLDNRTTTIK
VVPPLPTGLADVAVVKEHFSSYGEVSKVELEDNASIDSGKDHETQNESRAACVTFVKRSA
AEKAFANAKCWQEHTLQLVWVTRQSNRESNNNNNNSNSLSVSRDNLSSKNKCASVSNDPK
PAVEVKTSSTEEPENTNVSGDNDSTLDKQETKESDNDNNKSNHESIEGASEVIATAGTDE
EQSEQIHQ
NT seq 2727 nt   +upstreamnt  +downstreamnt
atggaactttctgtttcctctccaaagcaaagtgtgttatctccacctgattgtatgagt
gaccctgaggaggagcatgagatcagtgaggaggaggatgatgatcgcaaccataagcac
cgtaggaaagaagagaccaggtctcagtctttggaacaagattcttcagatcaggctttc
tcacggccgtacaggaaaaactatagacattatgaaaatggcaattcgtttagtgaacat
gaaaagcggtcttttgggactggatcagggcaacgtgtacagtttgataaccaaagaatg
aggtcaaacccaatgttttcaagggactctggtcctggtagaggtagaggaaactatggt
tcttgggcccagcgtgattccaggtttaatcctgttgatctctcatctcatatggttcaa
gtcgggtctatgggccagggtatgtttggaggaaggggactagctggtgtttcagctgct
caaagtgcaccatggcctccttttggaatgattcctggagttcctaatggtggcttggat
ggtttccatcacttacaagggtcccttagaccgcccttaaatgcgccacttaacatgggt
attcctcggcaacgatgcagagactttgaggaacgtggtttctgcctcagaggggacatg
tgtccaatggagcatggaatgaatcgtattgttgttgacgatgttcagagtctatcacag
tttaaccttcccgtttcagtccctggtgcacctcatctggcagcttcttctaaacaagtg
cccgctcagtttgggggtgccagtttcatgaatcctaaaggagctcatgggaggactaac
gaggggggaatggctgttgatggtttgggttatggggatgcatatcctagtgctggtgga
actgacttttacgatcctgatcaacctttgtggaataatagtactggtgaaacttcaggt
gcaatatctacactcaattctcatggggttgatgagaatgtggctccactggatgacagt
aaccaagacgccgctgaaaatgggtgtggtattagagactctagaagcacaagtcaatca
gtttggggaagaatgaaaggttctaatagtcaagcaaattccaaagagaaagctgatgca
gtattaaattcatcagctgttcctgaagatcaattgaaggaggtctcagttaattcatct
cgacacggtaaacaaaaccatgttggtgaaagtgtcgcaaaagttgttgattcatcgaat
atttcaaatgatatgatgaacaatacaaggaaaccaactcaaaaggcaatgcggactcta
tttgtgaattatgttccacacgagagcaacagaagggacctcattcttgcccattttcag
aaatttgggaaagttattgacattcacatcccagtaaatagtgagagagcatttgtgcag
ttctcaaaacgtgaagaggctgaatctgccctcagggcacctgatgctgtgatgggtaac
cgcttcatcaaactttggtgggcaaatagagatagtatacctgataatggcctgtccact
ggcagtggtgcttctatgaagggtcgtagtatgactgcttctggagcacagaaccaattt
cctattgctgctgcatcgaaaagcaaccatgtatcttcaattgctaaggtccctaccttc
caaactggtggagctccatcctcctctgaacagcctaagcctgtggtggtgaccaccagt
ggtcccaaggttacgccgcttcagcagaaaaaagcagacactcttgagcggttgaaggag
actcttcgtaaaaaacaggaaatgctggagcagaagcgtaacgagtaccgcaaaaaattg
gctacacttgaaaaacaaggtactgttgtcaagagggaggaagcagatgagccagatgct
aagcgtgttaaactagacacagcctctgattcgggagctgcaattgcatcaccaaaaaca
gagtcatcgacagataagaaagtgcctatcctgaaaccactttccaccgccaaactaagc
acagaaacgccatcacccgattcaaaaaactttaagcaaagaccatattcgtttaccaca
agtttgaacgctcctatggtaaataggtataagttggataaccgcaccacgaccatcaaa
gtggttcctcctttgccaactgggttagctgatgttgctgtcgtaaaggaacatttttca
tcttacggcgaagtctcaaaagtggaactggaagacaatgcatcgattgatagtggcaag
gatcatgaaacacagaacgaaagccgtgcagcttgtgtcacatttgtgaaacgcagcgca
gcagagaaagcgtttgctaatgcaaagtgttggcaagaacacacgttgcagctcgtgtgg
gtaacacgtcaaagcaacagagagagcaacaataacaataacaatagtaatagtctctct
gtttctcgtgacaaccttagcagcaaaaacaagtgcgcttctgtctctaatgacccaaaa
ccagcagttgaagtcaagacctcctctacggaagaaccagagaatacaaatgtttctgga
gacaacgacagtactttggataaacaagagaccaaagaaagcgacaatgataacaataaa
agtaaccacgagtccatcgaaggagcttctgaggtgattgcaactgcaggaactgatgaa
gaacaatctgaacaaattcatcagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (4)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (6)   
   UniProt (3)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (46)   

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