KEGG   Arabidopsis thaliana (thale cress): AT3G61420
Entry
AT3G61420         CDS       T00041                                 
Name
(RefSeq) BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03022  Basal transcription factors
ath03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    AT3G61420
  09124 Replication and repair
   03420 Nucleotide excision repair
    AT3G61420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ath03021]
    AT3G61420
   03400 DNA repair and recombination proteins [BR:ath03400]
    AT3G61420
Transcription machinery [BR:ath03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     AT3G61420
DNA repair and recombination proteins [BR:ath03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     AT3G61420
SSDB
Motif
Pfam: BSD PH_TFIIH
Other DBs
NCBI-GeneID: 825315
NCBI-ProteinID: NP_191701
TAIR: AT3G61420
UniProt: Q9M322
Position
3:complement(22726708..22732152)
AA seq 579 aa
MEKRVKYKSFVKDPGTLGSLELSEVMLLFVPNDPKSDLKLKVQTHNIKSQKYTKEGSNKP
PWLNLTSKQGRSHIFEFENYPDMHACRDFITKALAKCEEEPNKLVVLTPAEQLSMAEFEL
RFKLLRENSELQKLHKQFVESKVLTEDEFWSTRKKLLGKDSIRKSKQQMGLKSMMVSGIK
PSTDGRTNRVTFNLTSEIIFQIFAEKPAVRQAFINYVPKKMTEKDFWTKYFRAEYLYSTK
NTAVAAAEAAEDEELAVFLKPDEILAQEARQKMRRVDPTLDMDADEGDDYTHLMDHGIQR
DGTNDIIEPQNDQLKRSLLQDLNRHAAVVLEGRCINVQSEDTRIVAEALTRAKQVSKADG
EITKDANQERLERMSRATEMEDLQAPQNFPLAPLSIKDPRDYFESQQGNILSEPRGAKAS
KRNVHEAYGLLKESILVIRMTGLSDPLIKPEVSFEVFSSLTRTISTAKNILGKNPQESFL
DRLPKSTKDEVIHHWTSIQELVRHFWSSYPITTTYLSTKVGKLKDAMSNTYSLLDAMKQS
VQSDLRHQVSLLVRPMQQALDAAFQHYESDLQRRTAKIT
NT seq 1740 nt   +upstreamnt  +downstreamnt
atggagaagcgagtcaaatacaagagctttgtgaaggatccaggaactcttggatccctc
gaattaagtgaagtgatgctgctctttgtcccaaatgatcctaaatcagatttgaagctt
aaagttcagactcacaacatcaaaagtcagaaatataccaaagaaggatcaaataaacct
ccttggctcaatctgaccagcaagcagggaaggagtcatatctttgagtttgaaaattat
cctgacatgcatgcttgtcgtgatttcatcactaaggcccttgctaaatgtgaagaggag
cctaataaactagttgtcttgacacctgctgaacaacttagtatggcagaatttgagcta
cgcttcaagcttcttcgagaaaatagtgagttgcagaaattgcataagcaatttgtggaa
agtaaagtcctgacggaagacgaattctggtctacgaggaagaaattacttggtaaagat
tccattagaaagtcaaaacaacagatggggctcaaaagcatgatggtttcaggcatcaaa
ccgtctactgatggccggactaatagggtgacgtttaacttaacgtctgagataattttt
cagatttttgctgagaagccggctgttcgccaggcattcataaattatgttccgaaaaag
atgacagaaaaggacttttggacaaaatattttagagcagaatatctttacagcacaaaa
aatacagcagtagctgcagcagaagctgctgaggatgaggaactcgctgtctttctgaag
cctgacgagatattggctcaggaagctcgtcaaaagatgagacgggttgatccaactctt
gacatggacgctgacgagggagatgactacacccatcttatggaccacgggatccagcgc
gatggcaccaatgacattattgaaccacagaatgaccagcttaagaggtcacttttacaa
gatcttaatcgtcatgctgctgttgtattggaaggaagatgcatcaatgttcagtctgaa
gatacgagaattgttgcagaggctctcacacgggcgaaacaagtaagcaaagctgatggt
gaaatcaccaaggacgctaatcaggagaggttggagagaatgtcccgtgcaacagaaatg
gaggatcttcaagcaccacaaaacttcccattagcaccactctctatcaaggaccctcgt
gattactttgaatctcaacaaggaaacatcctcagtgaacccagaggagcaaaggcgtca
aaaagaaatgtccatgaagcttatggattactaaaagaatccattttggtgattagaatg
acgggattaagtgatccgttgattaaacctgaagtttcctttgaggttttcagttcgttg
acccgaactatctcaactgccaaaaatattctcgggaagaacccgcaagagagctttctg
gacagattaccaaagtccactaaggatgaagttatacatcactggacatcaatacaagaa
ttagtgagacatttttggtcatcttacccaataacaacgacatatcttagtaccaaggtt
ggtaaactgaaggatgcaatgtccaatacttattcactactcgatgcaatgaaacagtcg
gtgcagtctgatctccggcatcaagtttccttactagttcgtccaatgcaacaggctctt
gatgctgcgttccaacactacgaatcggacttgcagagaagaaccgctaagattacatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (35)   

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