KEGG   Arabidopsis thaliana (thale cress): AT4G30330
Entry
AT4G30330         CDS       T00041                                 
Name
(RefSeq) Small nuclear ribonucleoprotein family protein
  KO
K11097  small nuclear ribonucleoprotein E
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT4G30330
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT4G30330
   03041 Spliceosome [BR:ath03041]
    AT4G30330
   03032 DNA replication proteins [BR:ath03032]
    AT4G30330
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     AT4G30330
Spliceosome [BR:ath03041]
 Complex A
  U1 snRNP components
   Sm proteins
    AT4G30330
  U2 snRNP components
    AT4G30330
 Complex B
  U1 snRNP components
    AT4G30330
  U4/U6.U5 tri-snRNP components
    AT4G30330
 Complex C
  U2 snRNP components
    AT4G30330
DNA replication proteins [BR:ath03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     AT4G30330
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 829156
NCBI-ProteinID: NP_567844
TAIR: AT4G30330
UniProt: A0A178UZU6 Q8LAK5
Position
4:complement(14836548..14838149)
AA seq 88 aa
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV
SIKKKTRKPLGRILLKGDNITLMMNAGK
NT seq 267 nt   +upstreamnt  +downstreamnt
atggcgagcaccaaagttcagaggattatgactcaacccattaatctgattttcagattt
ctccaaagtaaagctcggattcagatttggctttttgagcagaaagatttgaggattgag
ggacgaattactggttttgatgagtacatgaatttggtgctggatgaggcagaggaagtg
agcatcaagaagaaaaccagaaaaccacttggtcggattttgcttaaaggagacaacata
actctcatgatgaacgcgggcaagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (3)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (46)   

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