KEGG   Arabidopsis thaliana (thale cress): AT4G32175
Entry
AT4G32175         CDS       T00041                                 
Name
(RefSeq) PNAS-3-like protein
  KO
K03681  exosome complex component RRP40
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AT4G32175
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT4G32175
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     AT4G32175
SSDB
Motif
Pfam: RRP40_S1 KH_6 Rrp40_N RRP4_S1
Other DBs
NCBI-GeneID: 829350
NCBI-ProteinID: NP_680755
TAIR: AT4G32175
UniProt: Q500X1 A0A654FUU6
Position
4:15535434..15537602
AA seq 241 aa
MAAKVSVSPTSLLNQIVVPGDVVLDLSNMNNQTIKLGSGLLQDNDAISAMRAGKLSYSKP
NKYWLESSHKRYIPRPDDHVLGIVVDSRADNFWVDIKGPQLALLPVLAFEGGTRRNIPKF
EVGTLLYLRVVKTNIGMNPELSCTEASGKAALFGPLRDGFMFETSTGLSRMLLNSPTRPV
IEALGKKLSFEIAVGLNGRVWVNATAPRIVIIVANAIMNSESLSGTQQRIMVEKLLAIIS
D
NT seq 726 nt   +upstreamnt  +downstreamnt
atggctgccaaagtttctgtctctcccacaagcctcttaaatcagattgtggttccaggt
gatgttgttcttgatttgtcaaacatgaataaccaaacaatcaagctcggaagtggcctt
cttcaggataatgatgctatctctgccatgagagctggcaaattaagttactccaagcct
aataagtattggctcgaaagttctcataaacggtatatacctcgccctgatgatcatgtt
cttggaatcgtggtcgattctagggcagataatttttgggtggacattaaaggacctcaa
ttagcacttttgccagttcttgcattcgaaggaggaacacgaagaaatattcccaagttt
gaggtaggcactctgctttatctccgggttgtcaagacaaacataggaatgaatccggag
ctgtcttgtaccgaggctagtgggaaagctgcattatttggacccttgagagatggtttc
atgtttgaaacttcaactggtctttcaagaatgctgttgaattcaccaacgcgcccggtc
attgaggctcttggaaagaaactctcgttcgagatagctgtgggcttaaatggcagagtt
tgggtaaatgcgacagctccacgtatagtcattatcgtggccaatgcaataatgaactcg
gaatctctaagtgggactcagcagagaatcatggttgagaaattgctcgcgataatttca
gactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (21)   

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