KEGG   Arabidopsis thaliana (thale cress): AT4G32520
Entry
AT4G32520         CDS       T00041                                 
Symbol
SHM3
Name
(RefSeq) serine hydroxymethyltransferase 3
  KO
K00600  glycine hydroxymethyltransferase [EC:2.1.2.1]
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath00260  Glycine, serine and threonine metabolism
ath00460  Cyanoamino acid metabolism
ath00630  Glyoxylate and dicarboxylate metabolism
ath00670  One carbon pool by folate
ath01100  Metabolic pathways
ath01110  Biosynthesis of secondary metabolites
ath01200  Carbon metabolism
ath01230  Biosynthesis of amino acids
ath01240  Biosynthesis of cofactors
Module
ath_M00532  Photorespiration
Brite
KEGG Orthology (KO) [BR:ath00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00630 Glyoxylate and dicarboxylate metabolism
    AT4G32520 (SHM3)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    AT4G32520 (SHM3)
  09106 Metabolism of other amino acids
   00460 Cyanoamino acid metabolism
    AT4G32520 (SHM3)
  09108 Metabolism of cofactors and vitamins
   00670 One carbon pool by folate
    AT4G32520 (SHM3)
Enzymes [BR:ath01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.2  Hydroxymethyl-, formyl- and related transferases
    2.1.2.1  glycine hydroxymethyltransferase
     AT4G32520 (SHM3)
SSDB
Motif
Pfam: SHMT Beta_elim_lyase
Other DBs
NCBI-GeneID: 829387
NCBI-ProteinID: NP_567895
TAIR: AT4G32520
UniProt: Q94JQ3 A0A178UTK1
Position
4:complement(15689436..15692989)
AA seq 529 aa
MQACCGGNSMASLQQPGRVQGSVFPPIMPPVTKFSQQLKFNISKPFRSSFLKRNLVSEMR
ASSVSLPNVEISSKEIPFEDYGLGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVME
AVGSCLTNKYSEGLPGKRYYGGNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPA
NFAVYTAILSPHDRIMGLDLPHGGHLSHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDY
DMLEKTATLFRPKLIIAGASAYSRDFDYPRMRKIADSVGAFLMMDMAHISGLVAASVVAD
PFEYCDIVTTTTHKSLRGPRGGMIFFRKDPINGVDLESAVNNAVFPGLQGGPHNHTIGGL
AVCLKHAQSPEFKAYQKRVVSNCRALANRLVELGFKLVSGGSDNHLVLVDLRPMGMDGAR
VEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGLSEKDFVVVADFIKEGVEIT
MEAKKAAPGSKLQDFNKFVTSPEFPLKERVKSLKERVETFTSRFPIPGV
NT seq 1590 nt   +upstreamnt  +downstreamnt
atgcaagcttgttgtggtggtaattcgatggcttctcttcagcaacctggacgggttcaa
ggatctgtctttcccccaattatgcctccagtgaccaaattttctcagcagttgaagttc
aatatttcaaaacctttccgttcttcatttctgaaaagaaacctggtctctgaaatgaga
gcatcttcagtctcgctacctaatgtcgagataagcagcaaagaaatcccttttgaggac
tatggtcttggtgaagttgatccagaggtccgaaccatcatcacaaaggagaaagataga
caattcaggagcttggagcttattgcatctgagaatttcacgtctcgagcagttatggag
gcggttggctcatgccttaccaacaagtattctgagggactgcctggtaaaagatattat
ggtggcaatgagtacattgatcagttggagacgctttgccagaaccgggctttggcagcc
ttccgcttagattctacgaaatggggggttaatgttcagccgttatctggttcacctgca
aactttgctgtctacactgcgatacttagccctcatgatcggatcatgggtttggattta
cctcacggtggtcatctgtcgcatgggttcatgaccgctaaaaggcgtgtatctggaact
tcaatatactttgagtccatgccttatcgacttgatgaatcaacaggcattgttgactac
gatatgctcgagaaaactgctacacttttcagaccaaagcttattatcgcaggagctagt
gcatacagccgagattttgactatcctcgcatgaggaagatcgcagactcagttggtgct
tttctgatgatggatatggctcatatcagtgggcttgtggctgcttctgtggtagctgac
ccttttgagtattgtgatattgttacaacaacaactcacaagtctttgagaggtccgaga
ggtggcatgatcttcttcaggaaggatccaattaatggggttgatcttgaatctgccgtg
aacaatgctgtcttccctggtttgcagggtggccctcataaccacacaattggaggatta
gcagtctgcttgaaacacgcacaatcaccggaattcaaggcgtaccagaaaagagttgtg
tctaactgtagagctctagctaaccgattggttgaactcgggtttaagctagtttctggt
ggcagcgataaccacttggttctcgtcgatcttagacccatgggtatggatggtgcgcgg
gttgagaaaatcttagacatggcatctattactctcaacaagaactctgtccctggggac
aaaagtgcgttggtaccagggggaataaggataggatcccccgcgatgacgacaagagga
ctgtcagagaaagactttgtagtagtggctgacttcatcaaggaaggtgtggagataaca
atggaagccaagaaagccgcgccgggttcaaagcttcaagatttcaacaagttcgtgaca
tctcctgagtttccattgaaagagagagtgaagagtctaaaggagagagtggaaaccttc
acatctcgttttcccattcctggcgtttaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (14)   
   KEGG PATHWAY (9)   
   KEGG MODULE (5)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (52)   

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