KEGG   Arabidopsis thaliana (thale cress): AT5G12980
Entry
AT5G12980         CDS       T00041                                 
Name
(RefSeq) Cell differentiation, Rcd1-like protein
  KO
K12606  CCR4-NOT transcription complex subunit 9
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AT5G12980
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT5G12980
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     AT5G12980
SSDB
Motif
Pfam: Rcd1 Roquin_1_2-like_ROQ
Other DBs
NCBI-GeneID: 831138
NCBI-ProteinID: NP_196802
TAIR: AT5G12980
UniProt: Q9LXU1 A0A178UJH3
Position
5:complement(4105383..4108232)
AA seq 311 aa
MANLPPPLSMKSVALSGASSPSSSSNNDRKLSSAEQLILDLSNPELRENALHELSKKREI
FQDLAPLLWHSVGTIPALLQEIIAVYPALSPPTMTPAQSNRVCNALALLQCVASHTDTRM
LFLKAHLPLYLYAFLNTSSKSRPFEYLRLTSLGVIGALVKVDDTEVIRFLLQTEIVPLCL
RTMENGSELSKTVATFIVQKVLLDDVGLEYMCTTAERFFALGRVLGNMVTSLAEGPSARL
LKHIIRCYLRLTDNPRACDALGSCLPDLLRDATFSGCLYDDPPAMQWLQQLLHNVNVGGR
APQGLAHMFVN
NT seq 936 nt   +upstreamnt  +downstreamnt
atggctaatcttcctcctccgctctccatgaaatctgtcgccctctcaggagcttcttct
ccttcttcttcctccaacaacgatcggaagctatcatcggcggagcagttaattctcgat
ctcagcaatcccgaactcagagaaaatgcacttcacgagttgtctaagaagagagagatc
tttcaagatttggctccgcttttatggcattctgttggtaccattcctgctcttctacag
gagattatcgcagtttaccctgccctatctcctccaaccatgactcctgctcaatctaac
agggtgtgcaatgcacttgctcttcttcagtgtgttgcttctcatactgatacgagaatg
ttgttcctaaaagcccatctgccattgtacctgtatgctttcttgaatacatcaagcaaa
tcaagaccgtttgagtacctgcggctgactagcttgggggttattggtgcacttgttaag
gttgatgatactgaagtgatcagattccttcttcaaactgagattgtcccattgtgcctc
cggacaatggagaatggcagcgagttatcaaagactgttgctactttcattgttcagaaa
gttttgctggacgatgttgggcttgagtacatgtgcacgacagcggagagattctttgct
ctgggtcgggttttgggaaatatggttacttcacttgcagaaggaccgtccgctaggcta
ctaaagcacatcatacgctgctatcttcgcttgacagataaccccagagcatgcgatgca
cttggaagttgccttccagatcttctgagggatgctactttcagtggttgtctctatgat
gacccacctgcaatgcaatggctgcagcaactgctccacaacgttaacgttggcgggaga
gcacctcaagggttggctcatatgtttgtgaattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (23)   

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