KEGG   Arabidopsis thaliana (thale cress): AT5G24120
Entry
AT5G24120         CDS       T00041                                 
Symbol
SIGE
Name
(RefSeq) sigma factor E
  KO
K03093  RNA polymerase sigma-I factor
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ath03021]
    AT5G24120 (SIGE)
Transcription machinery [BR:ath03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AT5G24120 (SIGE)
SSDB
Motif
Pfam: Sigma70_r3 Sigma70_r4 Sigma70_r2 Response_reg_2 GerE Sigma70_r4_2
Other DBs
NCBI-GeneID: 832477
NCBI-ProteinID: NP_001330408
TAIR: AT5G24120
UniProt: Q9ZNX9 A0A178URC9
Position
5:complement(8157151..8160343)
AA seq 517 aa
MGVVSISSSAARSPLGLGNDLLTHRSSLKKPSIVAFKADDSSNSALIIPPREQVLIPAEK
HNEKKREVTRRKPCKTPKKPLSLEHNSAPSCSLGVDYNEAAARLESIYKLSPATTTLVED
DVEDGGSKAKVSRRRKRKESGEEKKVVVRNNVKKEKRMSLDKRIALKRNVQEKPVVASVD
KKVTKRQQEEEKIERLVRDYSASNDIVSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLE
VKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFH
EFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPF
GLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVT
QEEFINGITDVDGVGANNSRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGE
IAGNLNISREMVRKHEVKALMKLKHQARVDYLRQYIV
NT seq 1554 nt   +upstreamnt  +downstreamnt
atgggagttgtgtctatttcaagttcagctgcaagatctccactcgggttgggcaacgat
cttttgacacatcggtcttcacttaaaaagccatccattgttgcttttaaagccgatgat
tccagcaattcagctttgatcattcctcctcgtgagcaagttttgattcctgctgaaaag
cataatgagaagaagagagaagtaacgaggagaaagccttgtaaaaccccgaaaaaaccg
ctttccttggaacataattcggctccttcgtgttcgttaggagtagattacaatgaagct
gctgcaagacttgaaagcatatacaagcttagtcctgcaacaaccacattagtcgaggat
gatgttgaagatggcggctctaaagccaaagtttcacggaggagaaaaaggaaagaaagt
ggtgaggagaagaaagtggttgtgaggaataatgtgaagaaggaaaaacgtatgagtctt
gataaacggattgctttgaagagaaacgttcaagagaaaccagtcgttgcttctgttgat
aagaaagtaacaaagaggcagcaagaagaggagaagatcgagaggcttgtgcgggactat
tcagcttctaatgatatagtgagcttggactggaaaaaaatgaagatacctcctgttctt
tcttctactgaacatgcttggttgttcaagttgatgcaacctatgaaggctcttcttgaa
gtgaaagatgtattgcaaaagagcttgggaagagagcctagggaagctgaaatagccggg
gagatcaatatgactgcgggtgaagtaaaaaagaaaatcgaaataggtagagctgcaaga
aacaaacttattaagcacaatctccggcttgtcttgtttgttatgaacaaatactttcat
gagtttaccaacggaccaaaattccaagacctttgtcaagcgggtatgagagggcttatc
acagcaattgaccgctttgagccgaaaaggaagtttcgtctttcgacttatggtttgttt
tggattagacatgccatcatacggtcaatgacaacttcaaacttcactcgtgtcccattt
ggacttgaatcggttagagtggagatatataaagcaaagactgagctatggtttgagatg
ggaagacctccaacggaggacgaggtagttgagagactcaagataacacctgagagatac
cgtgaagtattgagggctgcaaaaccggttttgtcactaaattcaaaacattcggttact
caagaagaattcatcaacggaatcacagatgttgatggtgttggagctaataacagcaga
cagcctgctcttctcaggctcgctctcgacgatgtgctcgattcattgaagccgaaagag
agtctggttattcgacagaggtacggtcttgatggaaaaggcgacaggactctaggagag
atagctggaaatctcaacatctctagagaaatggttaggaaacatgaagtcaaggccttg
atgaagcttaagcatcaggccagagttgattaccttcgtcaatacatcgtctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (3)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (6)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (6)   
   Pfam (6)   
All databases (34)   

Download RDF
DBGET integrated database retrieval system