KEGG   Arabidopsis thaliana (thale cress): AT5G28740
Entry
AT5G28740         CDS       T00041                                 
Name
(RefSeq) Tetratricopeptide repeat (TPR)-like superfamily protein
  KO
K12867  pre-mRNA-splicing factor SYF1
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT5G28740
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT5G28740
   03041 Spliceosome [BR:ath03041]
    AT5G28740
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     AT5G28740
Spliceosome [BR:ath03041]
 Complex B
  Other components
   Prp19-related factors
    AT5G28740
 Complex C
    AT5G28740
SSDB
Motif
Pfam: TPR_14 Suf Mad3_BUB1_I TPR_5
Other DBs
NCBI-GeneID: 832986
NCBI-ProteinID: NP_198226
TAIR: AT5G28740
UniProt: Q9LKU3 A0A178ULT4
Position
5:10780503..10783996
AA seq 917 aa
MAISKDLYPSQEDLLYEEELLRNQFSLKLWWRYLIAKAESPFKKRFIIYERALKALPGSY
KLWYAYLRERLDIVRNLPVTHPQYDSLNNTFERGLVTMHKMPRIWVMYLQTLTVQQLITR
TRRTFDRALCALPVTQHDRIWEPYLVFVSQNGIPIETSLRVYRRYLMYDPSHIEEFIEFL
VKSERWQESAERLASVLNDDKFYSIKGKTKHKLWLELCELLVHHANVISGLNVDAIIRGG
IRKFTDEVGMLWTSLADYYIRKNLLEKARDIYEEGMMKVVTVRDFSVIFDVYSRFEESTV
AKKMEMMSSSDEEDENEENGVEDDEEDVRLNFNLSVKELQRKILNGFWLNDDNDVDLRLA
RLEELMNRRPALANSVLLRQNPHNVEQWHRRVKIFEGNAAKQILTYTEAVRTVDPMKAVG
KPHTLWVAFAKLYENHKDLVNTRVIFDKAVQVNYKTVDHLASVWCEWAEMELRHKNFKGA
LELMRRATAVPTVEVRRRVAADGNEPVQMKLHRSLRLWSFYVDLEESLGTLESTRAVYEK
ILDLRIATPQIIMNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVKRYG
KTKLERARELFEHAVSMAPSDAVRTLYLQYAKLEEDYGLAKRAMKVYEEATKKVPEGQKL
EMYEIYISRAAEIFGVPRTREIYEQAIESGLPHKDVKIMCIKFAELERSLGEIDRARALY
KYSSQFADPRSDPEFWNKWHEFEVQHGNEDTYREMLRIKRSVSASYSQTHFILPENMMQK
DKLLDVEDAKGELKRAGLPEDEMAALERQLLSTTTPTEPAKDGGRRVGFVSAGVISQSGE
NEGKPVTGNGEDIELPDESDDESDGDDHVEISQKEVPAAVFGGLARKRDEDGEEAGEDGA
AQKLGALERIKRQKLNQ
NT seq 2754 nt   +upstreamnt  +downstreamnt
atggcgatttccaaagatctctatccttctcaagaggatctactctatgaggaagagctt
cttcgaaaccaattcagcttaaagctatggtggagatacctaatcgcaaaagctgaatct
ccttttaagaaacgcttcatcatctacgagagagctttaaaagcacttcctggaagctat
aaactgtggtacgcttatcttagagaacgactcgatatcgttaggaatttgcctgttact
catccacagtacgattctctcaacaatacttttgagagaggtcttgttactatgcataag
atgcctaggatttgggttatgtatcttcagactcttacggttcagcaattgattactcgg
actcggcgaactttcgaccgtgcgctttgtgctttacctgttactcaacatgataggatt
tgggaaccgtatcttgtgtttgtgagtcaaaatgggattcctattgagacttcacttagg
gtttatagaaggtatcttatgtatgatcctagtcatattgaggagtttattgagtttctt
gtcaagtctgagcgttggcaagaatctgcagagagattagcttctgtgttgaatgatgat
aagttttattctattaaagggaagactaagcataaactgtggttggagttgtgtgagctt
cttgtgcatcatgctaatgtgatttcgggtcttaatgttgatgctattataagaggaggt
attaggaagtttacggatgaagttggaatgctgtggacttctcttgcggattattacatt
aggaagaatttgttggagaaagctagggatatttatgaggagggtatgatgaaggtagta
actgtaagggattttagtgtgatatttgacgtttattcacggttcgaggagagtacggtc
gcgaagaagatggagatgatgagttcaagtgatgaagaagatgagaatgaagagaatggc
gtagaggatgatgaagaggatgttcgccttaattttaatctgtcggtgaaagagttgcag
aggaagatactgaatgggttttggttgaatgatgataatgatgttgatctgagattggct
cgtttggaagaactgatgaacagaagacctgcactggcaaacagtgtgctccttaggcag
aatcctcacaatgttgagcaatggcatcgtagagtcaaaatatttgagggaaacgcagca
aagcagattctcacatacacagaagcagtgaggactgttgatcctatgaaagcagttggg
aagcctcacaccttgtgggttgcttttgccaagttgtatgaaaaccacaaagacctggtc
aatactagagtgatttttgacaaagcagtccaggtaaactacaaaaccgtagatcatctc
gccagtgtgtggtgtgagtgggctgagatggagctgagacacaagaatttcaaaggagca
ttagagctgatgaggcgtgctacagctgtaccgacagtagaagtcagacggagagttgct
gctgatggcaatgaaccagtccagatgaagctgcatagatccttgaggctttggtccttt
tatgttgatctggaagaaagtctggggacgttagaatcgacaagagctgtctatgagaaa
atattggatttgagaatagctacacctcaaattataatgaattatgcttttcttcttgag
gaaaataagtactttgaagatgcgttcaaggtgtatgaaagaggtgtcaagatattcaag
tatcctcatgtgaaagacatttgggtaacctatcttacaaagtttgtcaagagatacggg
aagacaaagctggagcgggcaagagagttgtttgagcatgctgtttcaatggccccatct
gatgctgtcaggacgttataccttcagtatgctaagctagaagaggattatggtctggct
aaacgagccatgaaggtttatgaggaagccaccaaaaaagttccagaaggtcagaagctt
gagatgtacgagatatacatttcccgagcagcggagatatttggtgttcccagaacaagg
gaaatatatgaacaagcaattgaatctgggcttccacataaggatgtgaagatcatgtgc
ataaaatttgctgagctggagagaagcttgggagagattgatcgtgctcgtgcactctat
aagtattcctcccagtttgcagatccaaggtccgaccctgaattctggaacaaatggcat
gagttcgaggtccagcacgggaacgaagatacctacagagaaatgctccgtatcaagcga
agtgtttccgcaagctatagtcagactcatttcattctaccagagaacatgatgcaaaag
gacaagctgcttgatgtggaagacgcaaaaggcgagctgaagagagccggtttacctgaa
gacgaaatggcggctctggagaggcagcttttgtctacaactacccccacagagccagca
aaagatggcgggagaagagttgggtttgtaagcgcaggagtcatctcacagtccggtgag
aatgaggggaaaccagtgacagggaatggagaagacatcgagcttcccgatgaaagtgat
gatgagtctgatggagatgaccatgtggagatctctcagaaagaagtccctgccgctgtt
tttggaggacttgctagaaagagagacgaagacggcgaagaagctggagaagacggtgct
gcccagaaattgggtgcacttgagaggatcaagagacagaagcttaatcagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (45)   

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