KEGG   Arabidopsis thaliana (thale cress): AT5G42820
Entry
AT5G42820         CDS       T00041                                 
Symbol
U2AF35B
Name
(RefSeq) Zinc finger C-x8-C-x5-C-x3-H type family protein
  KO
K12836  splicing factor U2AF 35 kDa subunit
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT5G42820 (U2AF35B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ath03041]
    AT5G42820 (U2AF35B)
Spliceosome [BR:ath03041]
 Complex A
  U2 snRNP components
   U2 related factors
    AT5G42820 (U2AF35B)
 Complex B
    AT5G42820 (U2AF35B)
SSDB
Motif
Pfam: zf-CCCH RRM_1 zf_CCCH_4 Torus zf-CCCH_4
Other DBs
NCBI-GeneID: 834293
NCBI-ProteinID: NP_199096
TAIR: AT5G42820
UniProt: Q9FMY5 A0A178UM74
Position
5:complement(17169283..17172787)
AA seq 283 aa
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED
HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL
RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD
RDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDEGV
NT seq 852 nt   +upstreamnt  +downstreamnt
atggcagagcatttagcttcaatctttggtactgaaaaggatagagtgaattgtccgttt
tactttaagattggtgcttgtcgtcacggtgaccggtgctcacggcttcataaccgtccc
accatctcgccgacgcttctcctctcgaacatgtaccagagacctgacatgataactcca
ggtgtggatcctcagggacagccgttagacccgagtaagatccaagaccactttgaggat
ttctacgaagatattttcgaagaactcaacaagtttggtgaagtggagagtctcaatgtt
tgtgacaatcttgctgatcatatgattgggaatgtgtatgttctgtttaaggaggaggat
cacgcagctgctgcgttgcaggctttgcaggggagattttattccggtcgtcctatcatt
gctgatttctctcctgtgacggattttagggaagctacttgtaggcagtatgaagaaaac
agctgtaaccgtggtgggtactgtaatttcatgcatgtgaagcagatttcgagggagctt
aggaggaaattgtttgggaggtatcgtcgttcataccgtcggggaagcagaagtcgaagc
aggagtataagccctcgacgtaagagagagcattcgcgagagcgagagagaggggacgtt
agggaccgtgaccggcatggaaatgggaaaaggagcagtgatagatcagagaggcatgat
cgggatggtggtggaaggaggagacatggaagcccgaaacggagcagaagcccacgaaat
gtgagagaaggaagcgaggaaaggagggcgagaattgagcaatggaaccgagaacgtgat
gagggagtttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (52)   

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