KEGG   Arabidopsis thaliana (thale cress): AT5G56900
Entry
AT5G56900         CDS       T00041                                 
Name
(RefSeq) CwfJ-like family protein / zinc finger (CCCH-type) family protein
  KO
K24939  CWF19-like protein 1
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ath03041]
    AT5G56900
Spliceosome [BR:ath03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    AT5G56900
SSDB
Motif
Pfam: CwfJ_C_1 CwfJ_C_2 Torus zf_CCCH_4 zf-CCCH_2 zf-CCCH
Other DBs
NCBI-GeneID: 835792
NCBI-ProteinID: NP_974945
TAIR: AT5G56900
UniProt: Q84WU9
Position
5:complement(23019245..23022765)
AA seq 596 aa
MAPRILLCGDPLGRLNQLFKRVQSVSKSAGPFDALICVGQFFPDSPEILDEFLDYVEGRA
QVPIPTYFTGDYGVVAPKILSTTSKKAENQGFKMDGLEVCHNLFWLRGSGKFSLHGLSVA
YLSGRQSSESQFGKYSQDDVDALRALAEEPGGVDLFLTNEWPAGVTNRAAVSDIPVGISD
SSCSDSTVSELVMEVKPRYHIAGSMGVFYAREPYLNAESTHVTRFIGLAQVGNKNKQKFL
HALSPTPTSTMSPAELSAKPPKTTLWPYNLQDGAAESKKRPNDSDSDSQYWRYDVPKRQK
SGSQGEKLCFKFVCSGSCPRGEDCHFQHNAEAREQCRRGVCLDLIIKGKCEKGPECSYKH
EFQDESSIQRKPRSENANRSKECWFCLSSPSVESHLIVSVGESFYCALPKGSLVEDHILI
IPIEHLPNTLVLSPEVESELSRYQNGLRNCYKSQGNDAVFFELVSKRVSHANLQVVPVPS
SRARLLPNIFSLAAEKLGFKLVTKKFNDSTDGRKYLQKEYNAALGLFYVELPDGTVLSHT
LEENEVFPAQFGREVLAGLLKIPDRADWRNCKISQEEEAKLAEDFKKQFQEFDPCQ
NT seq 1791 nt   +upstreamnt  +downstreamnt
atggcgcccagaattttactctgtggagatcctcttggacgtctcaatcagctcttcaag
cgtgtccaatcggttagcaaatctgctggtccctttgatgctctgatttgcgtcggacag
ttttttcccgattctccagaaattctagatgagtttttggattacgtcgaaggtcgagct
caagttccgattcctacttacttcaccggagactatggtgtcgtcgcacccaaaatctta
tcgacgacttcgaagaaagctgagaatcaagggtttaagatggatggactcgaagtttgc
cacaatttgttttggttaagaggaagtgggaagttcagtctccatggtttgtctgttgct
tacttatctggtagacaatcatctgagagtcaatttgggaaatatagtcaagatgatgtt
gatgctcttcgtgcacttgctgaggaacctggaggagttgatttgttcttaactaatgaa
tggcctgcgggagtcacaaacagagctgcggtttctgatattcctgttggaatttctgat
tcctcttgtagtgattccactgtttctgagttggtaatggaagttaaacctcgctatcac
attgcaggttctatgggggtattttatgcccgtgaaccttacctcaacgctgaatctact
catgtaactcgctttattggtcttgctcaagttggaaataaaaacaaacagaaatttctt
catgcgctttctcctacaccaacatctaccatgtcaccagcagagcttagtgcaaagcct
ccaaaaactacgctatggccttataatttacaagatggagctgctgaatcgaagaagagg
ccaaacgatagtgactctgattcacagtattggaggtatgatgtcccaaagcggcaaaag
agtggatctcaaggggaaaagctctgtttcaaatttgtctgctcaggttcctgtcctcgt
ggtgaagattgccatttccaacacaacgctgaagcaagagaacagtgtcgtagaggtgtt
tgtcttgatcttatcatcaaaggtaagtgtgaaaaaggcccagagtgcagctacaagcat
gagtttcaagatgaaagtagcatacaaaggaagcccagatctgagaatgctaacaggtca
aaagaatgctggttttgtctatcaagcccgagtgtggagtcacatttaatcgtcagtgta
ggggaaagtttttattgtgctctacccaaaggttcgctagtcgaagatcacatattgata
atcccaatcgaacatttgcccaatactctggttttatcccctgaggttgaatcagagctc
agtagataccaaaatggtctgagaaattgttataagagccaaggaaatgatgcagttttc
tttgaattggtctctaaacgtgtttctcatgctaacctccaagttgttcctgttccatca
tccagagctcgtcttcttcctaatatctttagtctggcggctgaaaaactgggctttaag
cttgtgactaaaaagtttaatgatagtactgatggcagaaaatatctgcagaaggaatat
aatgcggcattgggtctcttctatgtggaacttcctgatggaactgtgctatcacacacc
ttggaagaaaacgaagtattccctgcgcagtttggacgggaggttctagcagggttgcta
aagatcccagatagggccgattggagaaactgtaaaattagccaagaagaggaggcaaag
ctggctgaagatttcaagaaacaatttcaagaatttgacccttgccaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (6)   
   Pfam (6)   
All databases (40)   

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