KEGG   Arabidopsis thaliana (thale cress): AT1G09800
Entry
AT1G09800         CDS       T00041                                 
Name
(RefSeq) Pseudouridine synthase family protein
  KO
K06173  tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ath03016]
    AT1G09800
Enzymes [BR:ath01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.12  tRNA pseudouridine38-40 synthase
     AT1G09800
Transfer RNA biogenesis [BR:ath03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    AT1G09800
 Prokaryotic type
    AT1G09800
SSDB
Motif
Pfam: PseudoU_synth_1
Other DBs
NCBI-GeneID: 837510
NCBI-ProteinID: NP_001322359
TAIR: AT1G09800
UniProt: F4I2L0
Position
1:complement(3176883..3180734)
AA seq 372 aa
MSDNLKHPLDCTASEESLERLSKVARIEGFSDEESEEQQGLADLESMNPVNPRVQRYLVA
IEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNVCHVDVE
RISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQERTYFYR
LLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQAKSPMRSLDE
LNITEVPSTPYFPSITERTLSNLNNGDPLACSNQPKSETAGVTTNVGEVEGSTEGDSFGR
RRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAKTVSAAKPMAPAS
GLYLARVRYEFP
NT seq 1119 nt   +upstreamnt  +downstreamnt
atgtccgataatctgaagcatcctctcgattgtacagctagtgaggaatcactcgagaga
ctctcaaaggttgcgagaatcgagggatttagtgacgaagaatcagaggaacagcaggga
ttggccgacttggagtccatgaacccagtaaaccctagagtgcagcgttacttggttgcc
attgagtacatcggaactcgtttctccggttcacaacagcaagctaaggaccgcaccgtc
gtcggtgtattgcaggaggcttttcataagtttataggccaaccagtaaagatcttttgc
tcaagtcgaacggatgccggagtgcatgcactgtcaaatgtttgtcatgttgatgtggaa
cgcatcagtaaaaggaagcctggtgaagtgttaccacctcatgagcctggtgtggtccag
agagcggtgaaccattttttacagagaaaagatggtgatgttatggtgattgatgttcgg
tgtgtcccaagtaattatcatgccagatataaggcccaggagcgcacatacttctaccgc
ttgctatccgggtcagatccattatcaatccttgaaaaagaccgttgctggcatgttcct
gaggagttaaatcttcgctttatgcaggaagcatgcagagttcttgttggatctcatgat
tttagctccttcagggcagctggttgccaggcaaagtcacctatgagatctttagatgaa
ctaaatatcactgaagtaccatcaactccatattttccatctatcacggaaaggacgttg
agtaacctaaacaatggagatcctctcgcatgttccaatcaacccaagtctgagactgct
ggtgttactactaatgttggagaagtggagggctctacagagggtgattcttttggtaga
aggagacgccaccgctgctatgtagttacagcacgttcccggggttttctgtaccaccag
gttcgactgattgtaggagcactgaaatgcgtaggcactggagaattgacggtctcagac
gttgaacgaatcctggaggcgaagacagtgagtgcagcaaaacccatggctcctgcatct
ggtctgtatcttgcccgtgtcagatatgagtttccatga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (2)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (26)   

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