KEGG   Arabidopsis thaliana (thale cress): AT1G18040
Entry
AT1G18040         CDS       T00041                                 
Symbol
CDKD1;3
Name
(RefSeq) cyclin-dependent kinase D1;3
  KO
K02202  cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03022  Basal transcription factors
ath03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    AT1G18040 (CDKD1;3)
  09124 Replication and repair
   03420 Nucleotide excision repair
    AT1G18040 (CDKD1;3)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:ath01001]
    AT1G18040 (CDKD1;3)
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ath03021]
    AT1G18040 (CDKD1;3)
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT1G18040 (CDKD1;3)
   03400 DNA repair and recombination proteins [BR:ath03400]
    AT1G18040 (CDKD1;3)
Enzymes [BR:ath01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.11  Protein-serine/threonine kinases
    2.7.11.22  cyclin-dependent kinase
     AT1G18040 (CDKD1;3)
    2.7.11.23  [RNA-polymerase]-subunit kinase
     AT1G18040 (CDKD1;3)
Protein kinases [BR:ath01001]
 Serine/threonine kinases: CMGC group
  CDK family
   AT1G18040 (CDKD1;3)
Transcription machinery [BR:ath03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     AT1G18040 (CDKD1;3)
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA processing factors
   5' end processing
    Capping factors
     AT1G18040 (CDKD1;3)
DNA repair and recombination proteins [BR:ath03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     AT1G18040 (CDKD1;3)
SSDB
Motif
Pfam: Pkinase PK_Tyr_Ser-Thr ABC1 Haspin_kinase
Other DBs
NCBI-GeneID: 838384
NCBI-ProteinID: NP_173244
TAIR: AT1G18040
UniProt: Q9LMT0 A0A178WHV0
Position
1:complement(6206871..6209528)
AA seq 391 aa
MPEQPKKVADRYLKQEVLGQGTYGVVFKATDTKTEQTVAIKKIRLGKQREGVNITALREI
KMLKELKHPHIILLIDAFPHKENLHLVFEFMETDLEAVIRDSNIFLSPADIKSYLLMTFK
GLAYCHDKWVLHRDMKPNNLLIGVDGQLKLADFGLARIFGSPNRKFTHQVFARWYRAPEL
LFGAKQYGAAVDVWAVACIFAELLLRRPFLQGNSDIDQLSKIFAAFGTPKADQWPDLTKL
PDYVEYQFVPAPSLRSLFPAVSDDALDLLSKMFTYDPKARISIKQALEHRYFTSAPAPTD
PAKLPKPVPKQDGKSSYGKHEAITVQSPPRKLRRVMPERGRVDSLKSHVDKDQQAPMSLD
FTILAERPPNRPTITSADRSHLKRKLDLEFQ
NT seq 1176 nt   +upstreamnt  +downstreamnt
atgccggagcagccaaagaaagttgctgataggtatctcaagcaagaggttcttgggcaa
ggtacctatggagtcgtcttcaaagccactgatactaagacggaacaaactgtagcaatt
aagaagataaggcttggtaaacaaagagaaggtgtaaatattacagctctcagagaaatc
aaaatgctcaaagagctaaagcatcctcatattattctgctcattgatgcatttcctcac
aaggaaaacttgcatcttgtctttgagttcatggagactgacctcgaagcagttattcgc
gattctaacattttcctctcacccgccgacattaaatcctacctcctaatgacatttaaa
ggacttgcttattgccacgataaatgggttttgcacagggatatgaagccaaataacttg
ttaataggagttgatggacagcttaagcttgcagattttggcttagcacgtatatttggt
agtccaaatcgtaagtttacccaccaggtgtttgctagatggtacagagcaccagaactt
ttgtttggtgcaaaacaatatggtgctgcagttgatgtttgggccgttgcctgcatattc
gccgaacttctactacgcagaccatttcttcagggaaacagtgatattgatcaattaagc
aaaatatttgctgcttttgggacaccaaaagcagatcagtggccggatttaacaaagctt
ccagattatgtagagtatcaatttgtccctgcaccgtctctacgttctttattcccagca
gttagtgatgatgctctcgacttgttgtccaaaatgtttacctatgacccaaaggctaga
atttccattaagcaggctctagaacacaggtacttcacttctgcacctgctcctactgac
ccggctaagctcccaaagcccgttcctaagcaggatggtaaatcatcttacggtaaacat
gaggccattacagtgcaatcaccaccacgtaagcttagaagagtgatgcctgagcgtggg
agggttgatagtttgaagtctcatgttgacaaggatcaacaagcacccatgtcattagat
tttaccatcctcgctgagcgacctccaaacaggccaacaatcaccagtgctgatagatct
catctgaagaggaaactcgatcttgagttccagtaa

  All links  
Ontology (6)   
   KEGG BRITE (6)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (37)   

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