KEGG   Arabidopsis thaliana (thale cress): AT1G50500
Entry
AT1G50500         CDS       T00041                                 
Symbol
HIT1
Name
(RefSeq) Membrane trafficking VPS53 family protein
  KO
K20299  vacuolar protein sorting-associated protein 53
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ath04131]
    AT1G50500 (HIT1)
Membrane trafficking [BR:ath04131]
 Protein recycling
  Others
   EARP complex
    AT1G50500 (HIT1)
 Endosome - Golgi transport
  Tethering complex
   GARP complex
    AT1G50500 (HIT1)
SSDB
Motif
Pfam: Vps53_N VPS53_C RINT1_TIP1 Vps54_N COG4_N XhlA NPV_P10 MPH2 COG2 COG5_N
Other DBs
NCBI-GeneID: 841472
NCBI-ProteinID: NP_001322424
TAIR: AT1G50500
UniProt: Q0WQF4 A0A5S9WKR6
Position
1:complement(18707924..18716118)
AA seq 828 aa
MDKSSALEYINQMFPTEASLTGVEPLMQKIQGEIRRVDASILSAVRQQSNSGTKAKEDLA
DATRAVEELSHKIQEIKSKAEQSEAMVQEICRDIKKLDFAKKNITTTITALHRLTMLVSA
VEQLQVMASKRQYKEAAAQLEAVNQLCNHFEAYRDVPKITELREKLNNIKQILKSHVFSD
FSSLGTGKETEETNLLQKLSDSCLVVDALEPSVREELVNNFCSRELTSYEQIFEGAELAK
LDKTERRYAWIKRRIRTNEEIWKIFPASWHVPYRLCIQFCKQTRKQVESILVNMKEKPVV
AILLLALQSTVEFEKELEKKFGGGVPTKDIEDDIEEIGTWEDNSQNISKIRKKYEKKFAA
SQETEENGFQQEKTGNKDLSVTGAGFNFRGMISSCFEPHLTPYIELEEKTLMDDLEKIVQ
EESWDVEDGSQNNVLSSSTQLFSNIKKSLKRCNTLSKNQTLFNLFKVFQRVLKAYATKLF
FKLPKGGTGIVAAATGMDGQIKVSERDERVICYIVNSAEYCHKTSGELAENVSEIIDPHY
ADGVDMSEVQDEFSAVITKALVTLVLGLETKFDTEMAVMTRVPWSTLESVGDQSGYVNGI
NTVLSGSIPVLGKLLTPVYFQFFLDKLASSLGPRFYANIFRCKQLSETGAQQMLLDTQAV
KSILLEIPSLARQTSTAASYSKFVSREMSRAEALLKVILSPIDSVADTYRALFPEGTPME
FQRILELKGLKKADQQSILDDFNKHGPGFTQQSVAAAMPQPMPTPPAPPLAITNPATAAG
FIANSEDVLTRAAALGRGAASTGFKKFIALTEAAKDRKDGPLRRLFNA
NT seq 2487 nt   +upstreamnt  +downstreamnt
atggataagtcgagtgctttagagtatatcaaccagatgttcccaacagaggcatcgcta
actggcgttgagccacttatgcaaaagattcagggtgaaattcggcgggtcgatgctagc
atactctctgctgttcgtcaacagagtaattcgggaactaaagctaaagaagatcttgct
gatgctacgcgtgctgtggaggaactctctcataagattcaagagataaaatccaaagct
gagcaaagtgaagcaatggttcaagaaatatgccgtgacattaagaagttagattttgca
aagaagaacataaccacgacaatcactgcccttcaccgcctcacaatgttagtctctgct
gttgaacagcttcaggtgatggcgtcaaaaagacaatacaaggaggcagctgcacagctc
gaggctgtaaaccaattgtgtaaccactttgaagcatacagggatgttcctaaaatcacg
gagctcagagagaagcttaataatataaagcaaatccttaagtcccatgtattttctgat
ttttccagtttaggtactgggaaagagacagaggaaacaaatttgctacagaagttatct
gattcttgcttggttgttgatgctctggaaccatctgtgagggaagagttggtaaataac
ttttgcagcagggagctcacctcatatgaacaaatttttgaaggagctgaattggcaaag
ttggataagacagagcggagatatgcttggataaagcgtcgaatccgaacaaatgaagaa
atttggaagatttttcctgcttcttggcatgtgccgtataggctatgcattcagttctgc
aagcaaacaaggaagcaagtagaatctattctggtcaacatgaaagagaagccagttgta
gcgatattgcttctggcactacaaagtacagtggagtttgaaaaagaacttgaaaagaaa
tttggtggtggtgttcctactaaagatattgaagatgacattgaagaaattggtacatgg
gaagataatagtcagaatatatccaaaatccgcaagaaatatgaaaagaagtttgctgct
agtcaagaaaccgaggagaatggttttcaacaggaaaagaccggaaacaaagatttatct
gttactggagctgggtttaacttccgtggaatgatctcttcctgctttgaacctcattta
actccatatattgagttggaagagaaaacacttatggatgacctggagaaaattgttcag
gaggaatcatgggatgttgaggatggaagccaaaataatgttttatctagtagcacacag
ctattttccaatataaagaagagcttgaaacgctgtaatactctcagtaagaaccagact
ttattcaatttgttcaaggtctttcaacgagttttaaaggcctatgctacaaagctattt
tttaagctcccaaaaggaggcactggtatcgttgccgcagccacaggcatggatggacag
ataaaggtctcggagagagatgaaagggtgatatgctacatagttaattctgctgagtat
tgccacaaaacatctggtgaactggcagaaaacgtctcagaaattattgacccacattat
gctgatggtgtagacatgtcagaggtccaggatgaattttcagccgtcataacgaaagca
ttggtaacgctggtccttggacttgagactaaatttgacacagaaatggcagtgatgaca
cgtgttccatggagcacacttgagagtgttggtgaccagtctgggtacgtgaatggaata
aatacagtccttagcggcagcatacctgtcctcgggaaacttctaacaccagtttacttc
cagtttttccttgacaagctggcatcatccctaggaccacggttctatgctaatattttc
agatgcaagcaactatccgaaactggagctcaacagatgttactagatacgcaagctgtg
aagtcgattctactagaaattccttcccttgccagacagacctcaactgctgccagctat
tccaaatttgtgagccgtgaaatgagcagagctgaagcactccttaaggtcatactatcc
ccaatcgactcagtggcagacacttatcgtgcactgtttccggagggaacgcccatggag
tttcaacgcatcttagaacttaagggtcttaagaaagctgatcagcagagtatactagat
gatttcaacaagcatggtccaggattcacacagcagtcggttgcagcagcaatgccacaa
ccaatgccaaccccacctgcaccaccattggcaatcactaatccggctacagctgcaggg
ttcatagcaaacagcgaggatgttttaaccagagcagctgctcttggcagaggagctgca
agcactggcttcaagaagttcattgctcttaccgaagctgccaaagaccgcaaagatggg
cctttaaggagactcttcaacgcatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (8)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (10)   
   Pfam (10)   
All databases (49)   

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