KEGG   Arabidopsis thaliana (thale cress): AT1G60200
Entry
AT1G60200         CDS       T00041                                 
Name
(RefSeq) splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein
  KO
K12822  RNA-binding protein 25
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT1G60200
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ath03041]
    AT1G60200
Spliceosome [BR:ath03041]
 Complex A
  U1 snRNP components
   U1 related factors
    AT1G60200
 Complex B
    AT1G60200
SSDB
Motif
Pfam: PWI RRM_1
Other DBs
NCBI-GeneID: 842315
NCBI-ProteinID: NP_176226
TAIR: AT1G60200
UniProt: Q8VY15 A0A654EJK6
Position
1:complement(22200694..22205400)
AA seq 899 aa
MADESSSPATGDPNSQKPESTTPISIPNPNPNPSLTPPPPQQHSQPPVAPLVPPGPPYAP
PAQIPSSLLPTNLPPPPPFRPGMQFTPVANFQNPSSGVPPPGSMPQYQPQPGMRPFQPMA
NGYPGIHGVAPPGAMPPHGLLRYPSPYPTMVRPGFIMRPPGTIGAVQLAPRPLIPGMPGL
RPVMPPMVRPASLPFVTPAEKPQTTIYIGKIATVENDFMMSILEFCGHVKSCLRAEDPTT
KKPKGFGFYEFESAEGILRAIRLLTQRTIDGQELLVNVNQATKEYLLKYVEKKIETAKKA
KESQGTKENQAEGPESEQDKLESADNETGKDGESKIKENIDIANSAVLTDEEREADREAM
EKIETAIEERLKSNPLPPPPPPPADGSGMEFAFKSKDGDSNTDVARSDAAANDVETSGEH
NRPDTSSPDWSKRNDRRSRERGEKEQEMDRYEREAERERSRKEREQRRKLEDAERAYQTR
LRQWERREREKEKERQYEKEKEKEKERKRKKEIRYEEEEEEDDDDSRRRWHRAALDERRR
RQLREKEDDLADRLKEEEEVAEAKRSAEEQNLQQQQLDALRILSGQAAIGSETVQTSPIE
NDHKATLQTVGESANEHHAADFEENGSGNESMAIDNNSGSEAHAPSKKLGFGLVGSGKRT
SVPSVFYEEDEDEARKAKKMKPLVPIDYSTEEQEAVAHGGSGNTPPHLALAAEFAKRISS
TNPKEETIETEKQRSRRSHDKASHRDRERERERDRDRDRVRDRGDGHSGPTKDAKESGKA
KIIDTKFLDAKQLIDTIPKTKEDLFSYEINWAMYDKHQVHERMRPWISKKIMEFLGEEEA
TLVDFIVSNTQQHVQASQMLELLQSILDEEAEMFVLKMWRMLIFEIKRVEAGVPVKSKA
NT seq 2700 nt   +upstreamnt  +downstreamnt
atggccgacgaatcttcttctccggccacgggggatcccaattcacagaaaccagaatcc
actactccgatttcaattcccaatccaaatcccaatccttcactaacaccaccgccgcct
caacaacattcgcaaccaccagtcgctcctctggttccacctggtccgccttatgctcct
ccggctcagattcctagctcgcttctccccaccaatctcccgccgccaccaccattccgt
cccggtatgcagttcactcccgttgcgaattttcaaaaccctagctctggagttcctcct
ccaggatctatgcctcagtatcaaccgcagcctggtatgagacctttccagcctatggct
aatggttatcccggaattcatggtgttgctcctcctggtgccatgcctcctcatgggctt
ctccggtatccttctccatatccaacaatggttcgtcctggattcattatgcggccgcct
ggtacaatcggtgctgttcaactagcaccacgaccccttattccaggaatgcctggtctc
cgtcctgtaatgcctcctatggttagaccggcttctcttccttttgtaacacctgcagaa
aagccccagaccacaatttacattggcaagatagctaccgtggaaaatgactttatgatg
tctattcttgagttttgtggccatgtcaaaagctgtttacgtgcggaagatcctaccacc
aagaaacctaaaggttttggattctatgaatttgaatcagctgaagggattctccgcgca
atacgcctgctgacccaacgtactatagatggacaagagcttttggtgaatgttaatcaa
gcaacaaaggagtatttgctaaaatatgttgagaagaaaatagagactgcaaagaaagcc
aaggaaagtcaaggaaccaaagagaaccaagctgaaggtcctgagagtgagcaagacaag
cttgagagtgctgataatgagacagggaaggatggagaatcgaagattaaagaaaacatc
gatattgcgaattctgctgtcctaactgatgaagaaagggaagcagacagagaggctatg
gaaaagattgaaactgctattgaagaaaggttaaagtccaaccctttgcctcctccacca
ccaccacctgctgatggttcaggcatggaatttgctttcaaatctaaggatggtgactcc
aacactgacgtagctaggagtgatgccgcagcaaatgatgttgagacttctggagaacac
aataggcctgacacaagctcacctgattggagtaagagaaatgaccgaagaagcagagaa
agaggtgagaaggagcaagaaatggatagatacgagagggaggctgaaagagaacggtca
aggaaagagagagagcaaaggaggaaacttgaggatgcagagcgtgcttaccagactcgt
cttcgacaatgggaacgaagagaaagagaaaaggagaaggaacgacagtacgagaaggag
aaagagaaagagaaagagcgcaagaggaaaaaggaaatccgctatgaggaagaagaggaa
gaagacgatgatgattcaagaagaagatggcatagggctgcattagatgagagaagaaga
cgacaactaagagaaaaggaggatgacttagctgatagattgaaagaagaggaagaggtt
gctgaggcgaagaggagtgccgaggagcaaaatttgcagcaacagcaattagatgcctta
agaatcctatcgggacaggcagctattggaagcgaaacggttcagacatcacctattgaa
aatgatcacaaggcaactctccaaactgtcggtgaatctgccaatgagcaccatgcagca
gattttgaagaaaatggttctggtaatgaatcgatggctatcgataataatagtggatca
gaggcacatgctccctcaaagaaattaggatttgggcttgtgggatccggaaagcgaact
tctgtgccttctgttttctatgaggaggatgaagatgaagcacgtaaggctaaaaagatg
aaacctttggttcctatagattactcaaccgaggaacaagaggctgtggcccatggtggc
tcagggaatacaccacctcatttggctttagccgctgaatttgcaaaacgaatttcgagt
accaatcccaaggaagagacgatagaaaccgaaaaacaaaggagcagacgttctcatgat
aaggcaagccaccgggacagggaaagggaaagggaaagggacagggacagggatagagtc
agggaccgaggtgacgggcatagtggtcccaccaaagacgccaaagagtctggaaaagca
aagataattgatactaagtttctggatgcgaaacaattgatagatacaatcccaaagaca
aaggaagatttattttcttacgagataaactgggctatgtatgacaagcaccaagtgcac
gaaagaatgagaccatggatctcaaagaaaattatggagtttctcggagaagaggaagcc
actctggtagatttcatcgtgtcaaacactcaacaacacgtgcaggcgtctcagatgctt
gagctgttgcaatcaattctagacgaagaagctgagatgtttgtgctgaagatgtggaga
atgctcatctttgagatcaagcgggttgaagctggagtcccggtaaaatccaaagcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (47)   
   KEGG ORTHOLOGY (1)   
   RefGene (39)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (2)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (7)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (2)   
   Pfam (2)   
All databases (64)   

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