KEGG   Arabidopsis thaliana (thale cress): AT1G75660
Entry
AT1G75660         CDS       T00041                                 
Symbol
XRN3
Name
(RefSeq) 5'-3' exoribonuclease 3
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03008  Ribosome biogenesis in eukaryotes
ath03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    AT1G75660 (XRN3)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AT1G75660 (XRN3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ath03021]
    AT1G75660 (XRN3)
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT1G75660 (XRN3)
   03009 Ribosome biogenesis [BR:ath03009]
    AT1G75660 (XRN3)
   03016 Transfer RNA biogenesis [BR:ath03016]
    AT1G75660 (XRN3)
Transcription machinery [BR:ath03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     AT1G75660 (XRN3)
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     AT1G75660 (XRN3)
Ribosome biogenesis [BR:ath03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    AT1G75660 (XRN3)
Transfer RNA biogenesis [BR:ath03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    AT1G75660 (XRN3)
SSDB
Motif
Pfam: XRN_M XRN_N zf-CCHC
Other DBs
NCBI-GeneID: 843900
NCBI-ProteinID: NP_565114
TAIR: AT1G75660
UniProt: Q9FQ03 A0A5S9WUP9
Position
1:28408134..28415118
AA seq 1020 aa
MGVPSFYRWLAEKYPLLVADVIEEEPVEIEGIKIPVDTSKPNPNNLEYDNLYLDMNGIIH
PCFHPEDRPSPTTFEEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
SAKDASDAAAEEERLREEFEREGRRLPPKVDSQVFDSNVITPGTEFMGVLSIALQYYVHL
RLNHDVGWKNIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLG
LATHEVHFSILREVVYTPGQQERCFLCGQMGHFASNCEGKPKKRAGESDEKGDGNDFVKK
PYQFLHIWVLREYLELEMRIPNPPFEIDLERIVDDFIFICFFVGNDFLPHMPTLEIREGA
INLLMAVYKKEFRSFDGYLTDGCKPNLKRVEQFIQAVGSFEDKIFQKRAMQHQRQAERVK
RDKAGKATKRMDDEAPTVQPDLVPVARFSGSRLASAPTPSPFQSNDGRSAPHQKVRRLSP
GSSVGAAIVDVENSLESDERENKEELKTKLKELIREKSDAFNSDTTEEDKVKLGQPGWRE
RYYEEKFSVVTPEEMERVRKDVVLKYTEGLCWVMHYYMEGVCSWQWFYPYHYAPFASDLK
DLGEMDIKFELGTPFKPFNQLLGVFPAASSHALPERYRTLMTDPNSPIIDFYPTDFEVDM
NGKRFSWQGIAKLPFIDERRLLEAVSEVEFTLTDEEKRRNSRMCDMLFIATSHRLAELVF
SLDNHCRQLSARERVDFKVKIKPKLSDGMNGYLTPCSGETHPPVFRSPMEGMEDILTNQV
ICCIYRLPDAHEHITRPPPGVIFPKKTVDIGDLKPPPALWHEDNGRRPMHNNHGMHNNHG
MHNNQGRQNPPGSVSGRHLGNAAHRLVSNSLQMGTDRYQTPTDVPAPGYGYNPPQYVPPI
PYQHGGYMAPPGAQGYAQPAPYQNRGGYQPRGPSGRFPSEPYQSQSREGQHASRGGGYSG
NHQNQHQQQQWHGQGGSEQNNPRGYNGQHHHQQGGDHDRRGRGRGSHHHHDQGGNPRHRY
NT seq 3063 nt   +upstreamnt  +downstreamnt
atgggtgtaccgtcgttttaccgatggttggccgagaagtatcctcttttagtggcggat
gttatcgaggaagagcctgttgaaatcgaaggcatcaagattcctgtggatactagtaaa
cctaaccctaacaacctcgaatacgataatctttatctcgacatgaacgggattatccat
ccttgctttcaccccgaagataggccatctccaactacctttgaggaggtgtttcagtgt
atgtttgattacattgataggcttttcgtgatggtacggccaaggaagttactctatatg
gctattgatggtgttgctccaagagctaaaatgaatcaacagaggtctagacggtttaga
tctgctaaagatgcatcggatgcagctgctgaagaagaaaggctacgagaggagtttgag
agggagggtagaagactccctcctaaagtggactctcaagtgtttgattctaatgttatt
acacctggaacggaattcatgggtgttctgtctattgcgctgcaatattatgtacacctt
agacttaatcatgatgttggttggaaaaatatcaaggtcatcctttcagacgcaaatgtt
ccaggtgaaggagagcataaaatcatgtcatacattcgtcttcaaagaaatcttcctggt
tttgacccaaacacacggcattgcttgtatggactggatgctgacctgattatgttgggc
ttggcgacccatgaagttcatttttcaattcttcgagaggtggtctacactcctggacag
caggagaggtgcttcttgtgtggtcaaatgggccattttgcttcaaattgtgaaggaaaa
ccaaagaagagggcaggagaatctgatgagaaaggcgatggaaatgattttgtcaaaaag
ccatatcagtttctacatatctgggttcttagagaatacctggagcttgagatgaggatt
cccaacccaccatttgagattgatctagagcgcattgttgatgattttatcttcatatgt
ttctttgtgggcaatgacttcttaccacatatgcccacattagagattcgagagggtgct
atcaacttgcttatggctgtttacaagaaggaatttcggtcttttgacggctacttaact
gatgggtgcaagccaaatttaaagagggtggaacagtttattcaggctgttggatcgttt
gaagataagatatttcagaaaagagccatgcaacatcagaggcaagcggaaagagtaaag
cgagataaagcaggtaaagcgacaaaaagaatggatgatgaagctccgacagttcaaccc
gatcttgttccggttgcacgatttagtggttctcgacttgcttcggctcctacaccttca
ccatttcagtccaatgatggaaggtctgctccacatcaaaaagttcgacgtttatctcca
ggatccagtgttggtgctgctattgttgatgttgagaacagtctcgagtctgatgaacgc
gagaacaaagaagagctaaagacaaagctcaaggagttaatccgtgagaaatcagatgcg
ttcaactcagatactactgaagaggataaggtgaagctagggcaacctggatggagagaa
cgttattatgaagagaagttctcagtagtaacccctgaagaaatggaaagagtccggaag
gatgttgttttgaagtacacagaaggcctttgttgggtcatgcattactacatggaaggt
gtttgctcctggcagtggttctatccttaccactatgcaccattcgcttctgatctgaag
gatttgggagagatggatattaagttcgaattaggaactccttttaagcctttcaatcaa
cttcttggggtgttcccagctgcaagttcgcatgcacttccagagcgctacaggaccttg
atgacagatcccaactctcctatcattgatttttacccaactgattttgaagtcgacatg
aatgggaagcgtttttcctggcagggtattgctaagctgcctttcattgatgaaaggcgc
ctactagaagctgtttctgaagtggaatttacattgacggatgaagagaagcgtagaaac
agcaggatgtgtgatatgcttttcatagcaacgtctcatcgtctagctgaactcgtcttt
tcacttgacaatcactgtcggcagttaagtgccagggagagagtagactttaaggttaag
atcaaacctaagctcagtgatggtatgaatggctacttgactccgtgttcaggggaaact
cacccgccagtattcaggtccccaatggagggtatggaggacatcttgaccaaccaagtc
atatgttgtatttacagacttccagatgcacatgaacacataaccaggcctcctcccggt
gtcatcttccctaagaagactgtggacataggggacttgaaacccccacctgctctgtgg
catgaagacaatggaaggagaccgatgcataataatcacgggatgcataataatcatggg
atgcataataatcaggggaggcaaaacccacctggaagtgtatctggaaggcatctggga
aacgcagcacatcgtcttgtttccaacagcttacagatgggaacagaccgatatcagaca
ccaacagatgtcccggctcctggttatggctacaatcctccgcagtatgttccaccaatt
ccttaccaacatggtggctatatggctccacctggtgcacaaggctatgctcagccagct
ccttaccaaaaccgaggtgggtaccaacctcgtggacctagtgggagattcccatcagag
ccttaccagagtcaatcacgggaaggtcaacatgcctctagaggaggggggtattctggt
aatcatcagaatcaacatcaacaacaacaatggcatggtcaaggtgggtccgagcaaaat
aacccacgagggtataatggtcagcatcatcatcaacaaggtggtgaccatgaccgcaga
ggaagaggaagaggaagtcatcatcatcatgatcaaggcgggaatcctagacatcgatat
tga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (56)   
   KEGG ORTHOLOGY (1)   
   RefGene (49)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (72)   

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