KEGG   Arabidopsis thaliana (thale cress): AT3G04680
Entry
AT3G04680         CDS       T00041                                 
Symbol
CLPS3
Name
(RefSeq) CLP-similar protein 3
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    AT3G04680 (CLPS3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT3G04680 (CLPS3)
Enzymes [BR:ath01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     AT3G04680 (CLPS3)
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     AT3G04680 (CLPS3)
SSDB
Motif
Pfam: CLP1_P Clp1 CLP1_N nSTAND3 CbiA AAA_22 ATP_bind_1 SRPRB GTP_EFTU ABC_tran T2SSE FtsK_SpoIIIE AAA_29 DUF1611
Other DBs
NCBI-GeneID: 819626
NCBI-ProteinID: NP_001319471
TAIR: AT3G04680
UniProt: Q9SR06 A0A178VJP2
Position
3:complement(1269722..1273004)
AA seq 444 aa
MAYGGPSMNPPALSGAVPGSANLKQVKLERESELRIEVSEEPLRLRVVNGTAEIFGSELP
PEIWRTFPPRMKFAVFTWYGATIEMDGVTETDYTADETPMVSYINVHAILDARRRFAKAS
TSNDPESSQGPRVIVVGPTDSGKSTLTKMLLSWAAKQGWRPTFVDLDVGQGSITIPGSIA
AAPIEMPLDPVEGFPLDMALVYYYGHASPNMNVELYKALVKELAQVLEKQFVGNPESRAA
GMVINTMGWIEGIGYELLLHAIDTFNASVVLVLGQEKLFSRLKDVLRSKSNVDVVKLHKS
GGVVARVKEVRKRSRNFKIQEYFYGLSKELSPYANTSSFSDLQVFRIGGGPQAPKSALPA
GSTSVSNPLRVTPVNIDDRDLLHSVLAVSYAEEPDQIISSNVSGFVYVTEVNVQKKKITY
LAPSPGTLPSKLLVAGSLAWLESV
NT seq 1335 nt   +upstreamnt  +downstreamnt
atggcgtacggtggtccgtccatgaatccaccggctttgagtggagctgttcccgggtct
gctaatctgaagcaagtgaaattggagagagaaagcgagctcaggatcgaagtctctgaa
gagcctctcagactccgtgtggttaacgggaccgctgagatttttggctctgaactgcct
cctgaaatatggcgtaccttccctcctcgcatgaaatttgcggttttcacttggtatgga
gcgacaattgagatggatggtgtcacggaaactgactatacagcagatgagacgccgatg
gtcagctacattaatgtgcatgccatactagatgcaaggagacgttttgccaaagcttcc
acatctaatgacccagaatcttctcagggacctcgggttattgtagtagggcctacggat
tccgggaagagcacattgacaaagatgctccttagttgggcagctaaacagggatggaga
cctacatttgtagaccttgatgttggccaaggctcgattacaataccaggatctattgct
gctgcccctattgaaatgccactggatccagttgaagggtttcctcttgatatggccctt
gtttactactacggccacgcatcaccaaatatgaacgttgaactgtacaaagctctggtg
aaagagcttgctcaagttctggagaaacagtttgtcggaaaccctgaatcgcgagctgct
ggaatggtgatcaacacaatgggatggatcgaggggattggttatgagctgcttctccac
gcaatagacacattcaatgcctcggttgtacttgtattgggtcaggaaaaactcttcagc
aggcttaaagatgtgctgagaagtaagagtaatgtcgacgtcgtgaagcttcacaagtct
ggtggagttgtagccagggtcaaagaggtccgtaaaagatcaaggaactttaagattcag
gaatatttttacggtttatcgaaagaactctctccgtatgccaatacatcgagtttcagt
gatctgcaagtgttccgaattggtggtggaccacaagcgccaaaatcggctcttccagcc
gggtctacctcggtttcaaatccgttgcgggtgacgcctgtaaatatcgatgatcgggat
ctgctgcattctgttcttgctgtctcatacgcagaagaaccagaccagatcatctcaagc
aatgtttctgggtttgtgtatgtgacggaagttaatgtgcagaagaagaagataacgtat
ttagcaccatcgcctgggacattacctagcaagttgttggtcgctggatcattggcatgg
cttgagtcagtatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (6)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (14)   
   Pfam (14)   
All databases (47)   

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