KEGG   Arabidopsis thaliana (thale cress): AT3G11910
Entry
AT3G11910         CDS       T00041                                 
Symbol
UBP13
Name
(RefSeq) ubiquitin-specific protease 13
  KO
K11838  ubiquitin carboxyl-terminal hydrolase 7 [EC:3.4.19.12]
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    AT3G11910 (UBP13)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:ath01002]
    AT3G11910 (UBP13)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ath04121]
    AT3G11910 (UBP13)
Enzymes [BR:ath01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     AT3G11910 (UBP13)
Peptidases and inhibitors [BR:ath01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   AT3G11910 (UBP13)
Ubiquitin system [BR:ath04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    AT3G11910 (UBP13)
SSDB
Motif
Pfam: USP7_ICP0_bdg UCH USP7_C2 MATH UCH_1 RA ubiquitin SASP Malt_amylase_C
Other DBs
NCBI-GeneID: 820364
NCBI-ProteinID: NP_001326292
TAIR: AT3G11910
UniProt: Q84WU2 A0A178VEE0
Position
3:complement(3760724..3770563)
AA seq 1115 aa
MTMMTPPPLDQQEDEEMLVPNPDLVEGPQPMEVAQTDPAATAVENPPPEDPPSLKFTWTI
PMFTRLNTRKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADAANLPYGWSRYSQFS
LAVVNQVNNRYSIRKETQHQFNARESDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAV
RKVLDYWSYDSKKETGFVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPTAS
IPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTV
VEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCKDVYASFDKYVEVERLEG
DNKYHAEGHDLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDR
EDGRYLSPDADKSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDV
KRALEEQYGGEEELPQNNPGFNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEH
LRVRLKKEQEEKEDKRKYKAQAHLFTTIKVARDDDITEQIGKNIYFDLVDHEKVRSFRIQ
KQTPFQQFKEEVAKEFGVPVQLQRFWIWAKRQNHTYRPNRPLSPNEELQTVGQIREASNK
ANNAELKLFLEIERGPDDLPIPPPEKTSEDILLFFKLYDPENAVLRYVGRLMVKSSSKPM
DIVGQLNKMAGFAPDEEIELFEEIKFEPCVMCEQIDKKTSFRLCQIEDGDIICYQKPLSI
EESEFRYPDVPSFLEYVQNRELVRFRTLEKPKEDEFTMELSKLHTYDDVVERVAEKLGLD
DPSKLRLTSHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVLDIPLPELQGLK
TLKVAFHSATKDEVIIHNIRLPKQSTVGDVINELKTKVELSHQDAELRLLEVFFHKIYKI
FPSTERIENINDQYWTLRAEEIPEEEKNIGPNDRLIHVYHFTKEAGQNQQVQNFGEPFFL
VIHEGETLEEIKTRIQKKLHVPDEDFAKWKFASFSMGRPDYLLDTDVVYNRFQRRDVYGA
WEQYLGLEHIDNAPKRAYAANQNRHAYEKPVKIYN
NT seq 3348 nt   +upstreamnt  +downstreamnt
atgactatgatgactccgccgccgctagatcagcaggaagacgaggagatgcttgttccg
aatccggatttggtcgagggacctcagcctatggaagttgcccaaactgatcctgctgct
accgctgtggagaatccaccacccgaggatcctccaagtctgaaattcacgtggaccatc
ccaatgttcactaggctcaataccaggaagcattactctgacgtatttgttgtaggcggt
tataagtggcgtatattgatttttcccaaaggaaacaatgtcgaccatttgtcaatgtac
ttggatgttgctgatgctgcgaatttgccgtacgggtggagcagatattcacagttcagt
ctggctgtagtgaatcaagtcaacaaccgatattccatcagaaaggagacgcaacatcaa
ttcaatgcaagagaaagcgactgggggtttacatcattcatgcctctcagcgagctctat
gaacccactcgaggatatttagtgaatgacactgttctgattgaagctgaagttgctgtg
cgtaaagttcttgattattggtcatatgactcaaaaaaagagacaggttttgttggacta
aaaaaccaaggtgctacctgttacatgaattctctcctgcagactttataccacatacct
tactttagaaaggctgtttaccacatgccaacgactgaaaatgatgcacctaccgctagt
atcccattggcgctccagagtttattttacaagcttcagtataatgataccagtgtagcg
acaaaggagctgacaaagtcgtttggttgggatacatatgattcttttatgcaacatgat
gtacaagaactcaacagagttctctgtgaaaagcttgaggacaagatgaagggaactgtt
gtggagggaacaatacaaaagctatttgaaggtcaccacatgaattacattgagtgcatt
aatgtagattacaaatctacacggaaagagtcattttatgacctccagcttgatgttaaa
ggctgcaaagatgtatatgcttcttttgacaagtatgttgaagttgaacgccttgaagga
gacaacaaataccatgcagaaggacatgatttgcaggatgcaaaaaaaggtgttctattc
atagactttccaccagttcttcaacttcagctcaagaggtttgaatacgattttatgagg
gacacaatggtgaagattaatgatcggtatgagtttcctctccaactggatctcgacaga
gaagatggaagatatttatcccctgatgcagacaagagtgtccgcaatctctacaccctc
cacagtgtcttggttcacagtggaggagtgcatggagggcattattatgcttttattagg
ccaacactttcagatcagtggtataaatttgacgatgaacgggtcacgaaagaagatgtc
aaaagagcactggaagagcaatatggtggtgaagaagagttaccgcagaataatcctggt
ttcaataatccacctttcaaattcacaaaatactcgaatgcatacatgcttgtttatatt
cgggaaagtgacaaggataagataatctgcaacgttgatgagaaagacattgcggaacat
ttgcgggtgaggctgaaaaaagaacaagaagaaaaggaagataaaagaaaatacaaggct
caagctcaccttttcacgacaatcaaggtcgcaagagatgatgacatcactgagcaaatt
ggaaagaatatatattttgatcttgttgatcatgaaaaagtgaggagttttcgaatccag
aaacagaccccctttcaacaatttaaggaagaggtagccaaagagtttggtgtcccggtt
caactacagcggttctggatctgggcaaagcgtcaaaaccatacttaccgccccaatcgt
cccctatcacctaatgaagaattacagacggttggacaaatacgagaggcatctaacaag
gcaaacaatgctgagctaaagctgtttttggaaatagagcgtggaccggatgaccttcct
attcctcccccagaaaaaacttctgaggatatccttcttttctttaaactctatgaccct
gagaacgcagtactaagatatgttggcaggctaatggtgaaaagttccagtaagcccatg
gatatagtagggcaattgaataaaatggctggttttgctcctgatgaggaaatagaactt
tttgaggaaataaagtttgaaccttgcgtaatgtgtgaacagattgataagaagacttct
ttcaggctgtgtcaaattgaagatggagatatcatttgttatcagaaacctctttctatc
gaggagagtgaatttcgatacccagatgtgccatcatttttggagtatgtacagaatcga
gagctggtgcgttttcgcacactggaaaaaccaaaagaggatgagtttactatggagctg
tcaaagctgcacacttatgatgatgtagtggaaagggtggctgagaagcttggccttgac
gatccatcaaaacttaggcttacatctcacaattgctactctcagcaacccaagcctcag
ccaatcaaataccgtggagtagatcatctttcagatatgttagttcactataatcagacg
tctgacatattgtattatgaagttttggatattcctcttccagaattgcaaggtcttaag
actctaaaagtagctttccatagtgccacaaaggatgaagtgataatccacaatatcaga
ctacctaagcagagtactgttggagatgttattaacgaactgaaaacaaaggtggagctt
tcgcatcaagatgcagaactgaggttacttgaggtctttttccacaagatctacaagatc
tttccatctactgaacgaattgaaaacatcaatgaccagtactggactttacgagcagag
gagatacctgaagaagagaagaatattggtcccaatgataggttaattcacgtatatcat
tttactaaagaggccggacaaaatcagcaagttcaaaattttggggaacccttctttttg
gtaatccacgaaggtgaaactttagaagaaatcaagacccgtatccaaaagaaactccat
gtccctgatgaggactttgccaagtggaagtttgcatcgttttcaatgggacgtcctgat
tacttgctggacacagatgttgtttataatcgctttcagagaagagatgtatacggtgcg
tgggagcagtatcttgggttggagcacattgataatgctcctaaaagggcttatgctgca
aatcagaaccgacacgcatacgagaagccggtgaaaatatacaattag

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