KEGG   Arabidopsis thaliana (thale cress): AT3G16260
Entry
AT3G16260         CDS       T00041                                 
Symbol
TRZ4
Name
(RefSeq) tRNAse Z4
  KO
K00784  ribonuclease Z [EC:3.1.26.11]
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ath03016]
    AT3G16260 (TRZ4)
Enzymes [BR:ath01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.11  tRNase Z
     AT3G16260 (TRZ4)
Transfer RNA biogenesis [BR:ath03016]
 Eukaryotic type
  3'processing and CCA adding factors
   3'processing factors
    AT3G16260 (TRZ4)
 Prokaryotic type
    AT3G16260 (TRZ4)
SSDB
Motif
Pfam: Lactamase_B_4 Lactamase_B_2 Lactamase_B
Other DBs
NCBI-GeneID: 820872
NCBI-ProteinID: NP_188247
TAIR: AT3G16260
UniProt: F4J1H7 A0A178V7J3
Position
3:5509344..5513245
AA seq 942 aa
MLTSSMPQNLSLFGFSPLKSSSFALILRPFSLYPPIFASSSPAPSRRPPRTAGYRRSGPS
PPRRKWSSFEEQKRKGRSPMEKDKAISFNHSSDSFEFNKRRAEGLDKVDKPKKNLKRNTR
TLNPTNTIAYVQILGTGMDTQDTSPSVLLFFDKQRFIFNAGEGLQRFCTEHKIKLSKVDH
IFLSRVCSETAGGLPGLLLTLAGIGEQGLSVNVWGPSDLKYLVDAMRSFIPRAAMVHTRS
FGPSLNISDSAPQIGLSKPKDDAYVLVDDEVVKISAILLEPSRLEESGSKPGETAVIYVC
ELPEIKGKFDPKKAMALGLRAGPKYSYLQSGQSVKSDFKDITVHPSDVMGPSVPGPVVLL
VDCPTESHAEELLSIPSMKTYYSCLDNSTDGAKLVNCIIHLSPASVTNSSTYRSWMKRFH
SAQHILAGHEAKNMEFPILRASSRITARLNYLCPQFFPAPGFWSHQHDNNSINPTSLSKC
FDSNLGESISAENLLKFTLRPHGNLGVDRSSIPSRLTALRVMDELLSEIPEISSKTEEIK
QLWNGQHNKMMIEEPWLGESTVPSCLENIRRDDMEIVLLGTGSSQPSKYRNVTAIYIDLF
SRGSILLDCGEGTLGQLKRRYGLEGADEAVRNLRCIWISHIHADHHTGLARILARRRELL
KGLAHEPAIVVGPRSLKNFLDAYQRLEDLDMEFLDCRNTTTTSWASVETSRPEKNTSSGN
AEGSLFSKGSLMQSIYKRPSSPLTDNSSALPFLKKLKKVLGEMGLEHLISFPVVHCPQAF
GVSLKAAERKNIAGDEIPGWKMVYSGDTRPCPEMVEASKGATVLIHEATFEDALVEEAVA
KNHSTTKEAIKVGSSAGVYRTVLTHFSQRYPKIPVIDESHMHNTCIAFDMMSINMADLHV
LPKILPYFKTLFRNQVVEEEEEEEETDDDSLIRDKVPSFFIN
NT seq 2829 nt   +upstreamnt  +downstreamnt
atgttaacttcatcaatgcctcaaaacctaagccttttcggattttctcctctcaagtct
tcttcgttcgctcttattctcagacccttttctctctacccaccaatcttcgcttcttct
tctccggctccgagtcgtcgtcctcctcgcaccgccggttaccgtcgcagtggcccttct
cctccgagacgcaaatggagtagtttcgaggagcagaagagaaaaggtaggtctccgatg
gagaaagataaagctattagctttaatcactcttctgattctttcgagtttaataagaga
agagctgagggattggataaggtcgataagcctaagaagaatctcaagaggaatactcgc
acccttaaccctaccaataccatcgcctatgttcagatccttgggactggaatggataca
caggatacgtcaccttctgtattactcttctttgacaaacaaagattcatctttaatgct
ggagaggggttgcaacgtttttgtactgaacataaaattaagttatcaaaggtagatcat
atatttttgtctcgtgtgtgctcagagacagcaggcgggcttccaggtcttctactgacc
ctagctggtatcggggaacaaggactatccgtcaacgtatggggtccttcagatcttaag
tatttggttgatgctatgaggtcatttatccctcgtgctgccatggttcatacaagaagt
tttggtccatcattgaatatatctgactctgcgcctcagattggcttaagtaaacccaaa
gatgatgcctatgttcttgtggatgacgaagttgtgaaaatatccgccattctcctagaa
ccaagtcgcttagaggaatctggcagcaaacctggtgaaacagcagttatatatgtatgt
gaattacctgaaatcaaaggaaagtttgatccaaagaaggccatggctcttggattgaga
gctggtccaaagtacagttatcttcagtctggacagtcagtcaagtcagattttaaagat
attacggttcatccgagtgatgtgatgggaccttcagttcctggtcctgttgttttgctt
gtggattgtccaacagagtcacatgccgaggaactgctatctatcccgtctatgaagact
tattattcatgtcttgacaattcaacagatggagctaagcttgttaattgtattattcat
ctaagtccagcttctgtaacaaatagttctacataccgaagctggatgaagagattccat
tctgcccagcacattctcgctggacatgaagcgaagaatatggagtttccaatcctgaga
gccagttctagaatcacagccagacttaactatttatgtccacagttcttcccagctcct
ggattttggtctcatcaacatgataataactcgataaaccccacttctttgagcaagtgc
ttcgattcgaatcttggtgaaagcatttctgctgaaaatctcctcaagttcactttgcgt
ccacatggtaatcttggggtagacagatctagtatccctagtcgattaacagctttacga
gtgatggatgagcttctttcagaaattcctgaaatcagcagtaagaccgaagaaatcaag
cagttatggaatggacaacacaacaagatgatgatcgaagagccatggctgggtgaaagc
actgttccaagctgtcttgaaaacattagaagagacgacatggagatagttcttttgggc
actggttcctcccaaccctcaaaataccgaaatgtcacggcaatttacatcgacctattc
tctagaggcagtattctcttggattgtggggaaggtaccttaggccagcttaaacgaaga
tatggtttagaaggagctgatgaagcagtcagaaacttgagatgtatatggatctctcac
atccatgctgatcaccatacgggtcttgcaagaatccttgctcgcagacgtgagcttttg
aaaggattggctcatgagccagcaattgtggttggaccgagatcgcttaagaactttctc
gatgcatatcaaagacttgaggatttagatatggagtttctcgactgcaggaacaccaca
acaacatcttgggcttctgtagaaaccagccgccctgagaaaaataccagtagcggcaat
gcagagggttctttgttcagtaaaggaagtctaatgcagagtatatataaaagaccgagc
agcccactgacagacaattcttcagctttaccattcttgaagaaactgaaaaaagtcctc
ggcgaaatggggttggagcatttgattagctttcctgttgtgcattgccctcaagccttt
ggggtttcgttaaaagcagcagaaagaaaaaacattgccggagatgagattccggggtgg
aaaatggtttactcgggagacacaaggccttgtcctgagatggttgaagcttcaaaagga
gcaacagttcttatacatgaggcgacgtttgaggatgcgttggtagaagaagctgtggct
aaaaaccatagcacaactaaagaagcaatcaaagttggatcttcagcaggtgtataccga
accgtactgacacattttagccagagatacccaaagatcccggtgattgacgaatcacat
atgcacaatacatgcattgcctttgatatgatgagtataaacatggcggatttacatgtg
cttccaaagattttaccttacttcaaaactctattcagaaaccaagtggttgaagaagaa
gaagaagaagaagagactgatgatgatagcttaatacgtgacaaagtcccaagctttttc
atcaattag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (30)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (6)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (3)   
   Pfam (3)   
All databases (54)   

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