KEGG   Arabidopsis thaliana (thale cress): AT3G21540
Entry
AT3G21540         CDS       T00041                                 
Name
(RefSeq) transducin family protein / WD-40 repeat family protein
  KO
K14556  U3 small nucleolar RNA-associated protein 12
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    AT3G21540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ath03009]
    AT3G21540
Ribosome biogenesis [BR:ath03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    AT3G21540
SSDB
Motif
Pfam: WD40 Utp12 ANAPC4_WD40 NBCH_WD40 RMC1_N WD40_like Nup160 WDR54 TFIIIC_delta PROPPIN eIF2A Rhamnogal_lyase Utp13
Other DBs
NCBI-GeneID: 821708
NCBI-ProteinID: NP_188791
TAIR: AT3G21540
UniProt: Q9LVF2 A0A654FBA3
Position
3:complement(7585886..7590998)
AA seq 955 aa
MVKAYQRYDAATSFGVISSVDSNIAYDSTGKYVLAPALEKVGIWHVRQGVCSKTLTPSSS
RGGPSLAVTSIASSASSLVAVGYADGSIRIWDTEKGTCEVNFNSHKGAVTALRYNKVGSM
LASGSKDNDIILWDVVGESGLFRLRGHRDQVTDLVFLDGGKKLVSSSKDKFLRVWDLETQ
HCMQIVSGHHSEVWSVDTDPEERYVVTGSADQELRFYAVKEYSSNGSLVSDSNANEIKAS
EEHSTENKWEILKLFGEIQRQTKDRVARVRFNVSGKLLACQMAGKTIEIFRVLDEAEAKQ
KAKRRLRRKEKKSSKVGDENSTANGEASAKIELADAVSSPTVLDVFKLLQVIRAGRKISS
FSFCPTAPKESLGTLALSLNNNSLEFYSLKSSENAKTVTIEHQGHRSDVRSVTLSEDNTL
LMSTSHSEVKIWNPSTGSCLRTIDSGYGLCSLIVPQNKYGIVGTKSGVLEIIDIGSATKV
EEVKAHGGTIWSITPIPNDSGFVTVSADHEVKFWEYQVKQKSGKATKKLTVSNVKSMKMN
DDVLAVAISPDAKHIAVALLDSTVKVFYMDSLKFYLSLYGHKLPVMCIDISSDGELIVTG
SQDKNLKIWGLDFGDCHKSIFAHGDSVMGVKFVRNTHYLFSIGKDRLVKYWDADKFEHLL
TLEGHHAEIWCLAISNRGDFLVTGSHDRSMRRWDRSEEPFFLEEEKEKRLEELFESEIDN
AADDRHGPMEEIPEEGVAALAGKKTIDVLSAADSIIDALEVAEDETKRHAAYEEEKTKGK
VPEYLPNAVMFGLSPSEYVLRAISNVRTNDLEQTLLALPFSDSLKFLCYMKDWSLIPEKV
ELVSRIATIILQTHHNQLVTTPSARPILSVLRDILYSEIKACKDTIGFNLAAMDHVKQMM
DARSDAPFKDAKAKLLEIRSQQAKRMASRGDTKMEKKRKKKQKKLEEGQHGHALF
NT seq 2868 nt   +upstreamnt  +downstreamnt
atggtgaaggcttaccaaagatacgatgcagcgacctctttcggtgtgatttcatctgta
gattcgaacatagcttacgattcgacggggaagtatgtgcttgctccggcgttggagaag
gtcggaatatggcacgtccggcaaggtgtctgctccaaaaccctaactccttcctcctct
cgcggtggaccatctctcgccgttacctctatagcctcctctgcttctagcttggtggca
gttgggtatgcagatgggagcataagaatatgggatactgagaaaggaacttgtgaggtt
aattttaatagccataagggggcggtgactgctttgcggtacaataaggttggatcgatg
cttgcatctggaagtaaagataatgatattatcttgtgggatgttgttggcgaatcaggt
ctttttcgtctccgtgggcaccgagatcaggtcacagatcttgtattcttggatggtggt
aagaaacttgtaagttcatctaaggacaagttcttgagagtctgggatcttgagacccaa
cactgtatgcaaatagttagtggtcatcatagtgaagtgtggtctgttgatactgatcca
gaggagagatatgttgttactgggtcggctgatcaagaacttagattttatgctgtcaag
gaatattcgtctaacggatcattggtatctgactcaaatgcaaatgaaatcaaggccagt
gaagaacattcgacagagaacaagtgggaaattctaaagctgtttggggaaattcagaga
caaactaaggatagagttgcgagagttagattcaatgtttcgggaaaacttctggcttgt
caaatggcaggtaaaactattgaaatattccgggttttggatgaagctgaggctaagcag
aaagcaaagcgtaggcttcgcagaaaagagaagaagagttccaaagtgggggatgaaaat
tcaaccgctaatggcgaagcaagtgctaaaattgaactagctgatgctgtttctagtcct
actgtccttgatgttttcaagctcttacaagtcattagagctgggagaaaaatcagctct
ttctctttctgtccgacagctccaaaagaatccttaggaacattagctctctctttgaac
aataactcactggaattctattcccttaaaagcagcgaaaacgcgaaaactgttaccatt
gaacaccaaggacatcgctctgatgtgaggagtgttaccctcagtgaagacaacaccctt
ttgatgtcaaccagtcacagtgaagtaaaaatttggaatcccagtacaggttcctgcctc
cggaccattgattcaggatatggattatgcagtttgattgttccccaaaacaagtatggt
attgttggaaccaagagtggggtacttgaaatcattgatatagggagcgctaccaaagtg
gaagaagtgaaggctcatggtggcactatttggtcaattacacctattccaaacgatagc
gggtttgtcacagtcagtgcagatcatgaagtcaaattctgggaataccaagtcaaacag
aaatctggcaaggcgaccaagaaactcactgtttcaaatgttaagtccatgaagatgaat
gacgatgtacttgctgttgctatcagcccggatgctaaacacatagcagttgcactgctt
gattccacagtgaaggttttctacatggattccctaaaattctacctctccttatatggc
cacaagttgcctgtgatgtgcattgacatctcatcagatggagagttgattgttactggt
tctcaggacaaaaatttgaaaatttggggtttggattttggtgattgtcataagtctatc
tttgctcatggtgacagtgtcatgggtgtaaaatttgttcggaatacccattatctgttc
agcattgggaaagaccgcctcgtcaagtattgggatgctgacaaattcgagcatttgtta
acgcttgaaggacatcatgcagagatttggtgccttgctatcagtaaccgtggtgatttt
ctcgtaacaggatctcatgaccgctccatgcgtcgctgggatcgctctgaagaacctttc
ttcctcgaggaagagaaggaaaagaggttagaagagctttttgagtctgagattgataat
gcagcagatgacaggcatggacccatggaggaaattccagaggaaggtgttgcagcatta
gctggcaagaagacgatagatgttctatcagctgctgattcaattatagatgctctggaa
gtagcagaagatgaaacaaagcgtcatgctgcttatgaggaggagaaaacaaagggaaaa
gttcctgaatacctacccaacgctgtgatgttcgggctttctccgtccgaatatgttctc
agggccatctcaaatgtgagaacaaatgatcttgagcagactttgctggctctaccattc
tcagattctttgaagtttctttgctacatgaaagactggagtttaattcccgaaaaggta
gagttggttagcagaatcgcaaccattatattacagacacatcacaaccagttggtaaca
acaccatctgccagaccaatcttaagcgttctcagggacattctttactcagaaatcaag
gcatgcaaagatacaatcggtttcaatttggccgccatggatcatgtcaagcaaatgatg
gatgcaagatctgatgctcccttcaaagatgcaaaggccaagctattggagataaggtca
cagcaagcaaaacgtatggcatcacgaggagatacaaagatggagaaaaagagaaagaag
aagcagaagaaattagaggaaggacaacatggccatgctttgttctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (13)   
   Pfam (13)   
All databases (43)   

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