KEGG   Arabidopsis thaliana (thale cress): AT3G23890
Entry
AT3G23890         CDS       T00041                                 
Symbol
TOPII
Name
(RefSeq) topoisomerase II
  KO
K03164  DNA topoisomerase II [EC:5.6.2.2]
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ath03032]
    AT3G23890 (TOPII)
   03036 Chromosome and associated proteins [BR:ath03036]
    AT3G23890 (TOPII)
Enzymes [BR:ath01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     AT3G23890 (TOPII)
DNA replication proteins [BR:ath03032]
 Eukaryotic type
  DNA Topoisomerases
   AT3G23890 (TOPII)
Chromosome and associated proteins [BR:ath03036]
 Eukaryotic type
  Chromosome condensation proteins
   Other regulators of chromosome condensation
    AT3G23890 (TOPII)
  Centrosome formation proteins
   Centriole proteins
    AT3G23890 (TOPII)
SSDB
Motif
Pfam: DNA_topoisoIV TOPRIM_C DNA_gyraseB Toprim HATPase_c
Other DBs
NCBI-GeneID: 821972
NCBI-ProteinID: NP_189031
TAIR: AT3G23890
UniProt: P30182 A0A178VFD9
Position
3:8624636..8631392
AA seq 1473 aa
MATKLPLQNSNAANVAKAPAKSRAAAGGKTIEEMYQKKSQLEHILLRPDTYIGSIEKHTQ
TLWVYEKDEMVQRPVTYVPGLYKIFDEILVNAADNKQRDAKMDSVQVVIDVEQNLISVCN
SGAGVPVEIHQEEGIYVPEMIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIE
TADGKRLKKYKQVFENNMGKKSEPVITKCNKSENWTKVTFKPDLKKFNMTELEDDVVALM
SKRVFDIAGCLGKSVKVELNGKQIPVKSFTDYVDLYLSAANKSRTEDPLPRLTEKVNDRW
EVCVSLSEGQFQQVSFVNSIATIKGGTHVDYVTSQITNHIVAAVNKKNKNANVKAHNVKN
HLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKVGKSGVVENLLSWADFK
QNKDLKKSDGAKTGRVLVEKLDDAAEAGGKNSRLCTLILTEGDSAKSLALAGRSVLGNNY
CGVFPLRGKLLNVREASTTQITNNKEIENLKKILGLKQNMKYENVNSLRYGQMMIMTDQD
HDGSHIKGLLINFIHSFWPSLLQVPSFLVEFITPIVKATRKGTKKVLSFYSMPEYEEWKE
SLKGNATGWDIKYYKGLGTSTAEEGKEYFSNLGLHKKDFVWEDEQDGEAIELAFSKKKIE
ARKNWLSSYVPGNHLDQRQPKVTYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILF
VAFKKIARKEMKVAQLVGYVSLLSAYHHGEQSLASAIIGMAQDYVGSNNINLLLPNGQFG
TRTSGGKDSASARYIFTKLSPVTRILFPKDDDLLLDYLNEDGQRIEPTWYMPIIPTVLVN
GAEGIGTGWSTFIPNYNPREIVANVRRLLNGESMVPMDPWYRGFKGTIEKTASKEGGCTY
TITGLYEEVDETTIRITELPIRRWNDDYKNFLQSLKTDNGAPFFQDVKAYNDEKSVDFDL
ILSEENMLAARQEGFLKKFKLTTTIATSNMHLFDKKGVIKKYVTPEQILEEFFDLRFEYY
EKRKETVVKNMEIELLKLENKARFILAVLSGEIIVNKRKKADIVEDLRQKGFTPFPRKAE
SVEAAIAGAVDDDAAEEPEEILVDPESSSSYIPGSEYDYLLAMAIASLTIEKVEELLADR
DKMIIAVADMKKTTPKSLWLSDLESLDKELEKLDLKDAQVQQAIEAAQKKIRAKSGAAVK
VKRQAPKKPAPKKTTKKASESETTEASYSAMDTDNNVAEVVKPKARQGAKKKASESETTE
ASHSAMDTDNNVAEVVKPKGRQGAKKKAPAAAKEVEEDEMLDLAQRLAQYNFGSAPADSS
KTAETSKAIAVDDDDDDVVVEVAPVKKGGRKPAATKAAKPPAAPRKRGKQTVASTEVLAI
GVSPEKKVRKMRSSPFNKKSSSVMSRLADNKEEESSENVAGNSSSEKSGGDVSAISRPQR
ANRRKMTYVLSDSESESANDSEFDDIEDDEDDE
NT seq 4422 nt   +upstreamnt  +downstreamnt
atggctaccaaacttccccttcaaaacagcaatgccgccaatgttgcgaaagctccggct
aaatctcgagctgccgccggcgggaagacgatcgaggaaatgtatcagaagaaatcgcag
cttgaacacattcttctccgtcctgatacatacatcggatctatcgagaaacacacccaa
acactttgggtttatgagaaagatgagatggttcaacgtcctgttacctatgtacctgga
ttgtataagatctttgatgagattctcgtaaacgccgctgataacaaacagagagatgcg
aagatggattccgttcaagttgtgattgatgttgagcagaatctgattagtgtttgtaac
agtggagctggagttcctgtagagattcatcaggaagaaggaatttatgtaccggagatg
atatttggtcatttgttgacgagtagtaactacgatgataatgtgaagaagaccactggt
ggaagaaacggatatggtgctaagcttactaatatcttctctactgaattcatcatcgag
actgcagatgggaagagactcaagaagtataagcaggtctttgagaacaacatggggaag
aaatctgaaccggttataaccaagtgtaataagagtgagaactggacgaaggttacattc
aaaccagatttgaagaagtttaacatgactgaattagaagacgatgtggttgctctaatg
agtaagcgagtgtttgatattgctggatgtttggggaagtctgtcaaagttgagctgaat
gggaaacaaataccagtgaagtcattcactgattatgttgacctatacctaagtgcagct
aataaatcgaggacggaggatcctctcccaaggttgactgagaaagttaatgatagatgg
gaggtttgtgtgagcttaagtgaaggacaatttcagcaggtcagctttgtcaactccata
gcaacaatcaagggtggtacacatgttgactatgtgacgagtcagattacaaaccatatt
gtggctgctgtgaacaaaaagaataaaaacgcaaatgttaaggcccataatgtgaaaaac
catctgtgggtctttgtcaatgcattgattgacaatcctgcttttgattctcaaacaaaa
gaaacactgactcttcgacagagcagttttgggtcgaaatgtgaactttcagaagatttt
ctgaagaaagttggaaaatctggcgtagtggagaatttgctttcatgggcagatttcaag
cagaacaaagatctaaagaaaagtgatggagccaaaacagggagggttctagttgagaag
ttagacgatgccgccgaagctggagggaagaactctcgactctgtacgttaattttgact
gaaggagactcagcaaaatctctcgctttggcggggaggtctgtcttgggtaataactac
tgcggtgtgtttccgcttcgaggaaagctattgaatgtcagggaagccagcaccactcag
attacaaacaataaggaaattgagaacctcaagaagatccttggactaaagcaaaatatg
aagtacgagaatgttaactcattaagatatggccagatgatgatcatgactgatcaagat
catgatggttctcatataaagggtctcttaatcaattttatccactctttttggccgtcg
ttactccaggttccatcattcctggttgagtttataacacccattgtgaaggctacgcgt
aagggtacaaaaaaagttctgtcattctactcaatgcctgaatacgaagaatggaaagaa
agtctgaagggtaatgcaaccgggtgggatatcaaatactacaaggggttgggtacaagt
acggctgaggagggcaaagagtactttagtaatcttggtcttcacaaaaaggattttgtt
tgggaggatgaacaagatggagaagccattgaacttgctttcagtaaaaagaagatcgaa
gcccggaaaaattggctttcgagctatgtgcctggcaatcatcttgatcagagacaaccg
aaagttacgtacagtgacttcgtgaacaaagaactgatcttgttctccatggcggatctt
caacggtcaattccctcaatggttgatgggctcaaaccgggtcagagaaagatacttttc
gttgcattcaagaaaatcgctcgtaaagaaatgaaggttgcccagctcgttggttatgta
tcattgctgtcagcttatcatcatggcgagcagagtcttgccagtgctatcataggcatg
gcgcaggattacgtgggcagcaacaatatcaacttacttctaccaaatggtcaatttggt
acacgaacttcgggtggaaaagattcagctagtgcaagatacattttcactaagctctct
ccagtaacaaggatcttgtttcccaaggatgatgatctccttcttgattacttgaatgaa
gacgggcaaaggatagagccaacttggtacatgcccatcattccaactgtacttgtcaat
ggcgctgaaggcattggaactgggtggagcacgttcataccaaactataaccctagagag
atcgttgctaatgtaaggcgtttacttaacggtgaaagtatggtgcctatggatccttgg
tatagaggttttaaaggaacaattgagaaaactgcgtccaaagaaggtggttgtacttac
acaatcactggtctatatgaggaggtggatgaaacaactattcgaatcacggagttgcca
atcagaaggtggaatgatgattacaaaaatttcttgcagtcattgaagacagataatggt
gcaccttttttccaggatgtcaaggcttacaatgacgagaaatctgttgattttgacctt
attttgagtgaagagaacatgctggcggctcggcaagagggctttctgaagaaattcaaa
ctcaccacgacaatcgctacaagtaatatgcatctctttgataaaaaaggtgtgataaag
aaatatgtgaccccagaacaaatccttgaagagttctttgacctcaggtttgaatactat
gagaagagaaaggaaaccgtggtgaagaatatggaaattgagctgttgaaactagaaaac
aaagcgaggtttattcttgcagttctcagtggagaaatcatagtgaacaagaggaagaaa
gccgatattgttgaggacttaagacagaaagggttcacaccatttccgaggaaggccgag
tctgtcgaagctgcaattgctggagcagttgatgatgatgcagctgaagaacctgaagaa
atcttagtggatccggagtcaagctccagttatatacccggctcggaatatgactaccta
ttggcaatggctatagcttcgttgactatagagaaagttgaggagttattagcagacaga
gataaaatgattattgcagttgcagacatgaagaaaaccacaccgaaatccctctggctc
agtgacctagagtctcttgacaaggaactagaaaaacttgatctgaaagatgctcaagtc
caacaggctatagaggcagcacagaaaaaaatcagggccaaatctggagcagcagtaaag
gttaaaaggcaggcaccaaagaaaccagcaccaaagaagaccacaaagaaagccagtgaa
tctgagacaacagaggcttcctattcagcaatggacacagataacaacgtagcagaagtg
gtgaagccaaaagctagacaaggagcaaagaagaaagccagtgaatctgaaacaacagag
gcttcccattcagcaatggacacagataacaacgtagcagaagtggtgaagccaaaaggt
agacaaggagcaaagaagaaggctccagcagctgcgaaggaggttgaggaggatgaaatg
ttggatctagcacaacggcttgctcaatacaatttcggctcagcacctgcggattcaagc
aaaacagctgaaacatcgaaagcaattgctgtggatgacgatgatgatgacgtggtagtt
gaggttgcaccagtaaagaaaggaggaaggaaaccggcggcgactaaagctgcaaaacca
ccagcagctccgaggaaacgagggaagcagacagttgcttcaacagaggttctggcaatt
ggtgtgtccccggagaagaaagtgaggaagatgagatcatctccgttcaacaagaagagt
agttcagtgatgagcaggttggctgataataaggaagaggagagcagcgagaatgtggct
ggaaactcatcgtctgagaaatctggaggagatgtttctgcgatatcgaggcctcaaaga
gctaataggaggaaaatgacctatgtgttgagtgattccgagagtgaatctgcgaatgat
tctgagtttgatgacattgaagacgatgaagatgatgagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (65)   
   KEGG ORTHOLOGY (1)   
   RefGene (59)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (83)   

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