KEGG   Arabidopsis thaliana (thale cress): AT3G26560
Entry
AT3G26560         CDS       T00041                                 
Name
(RefSeq) ATP-dependent RNA helicase
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT3G26560
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ath03041]
    AT3G26560
Enzymes [BR:ath01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     AT3G26560
Spliceosome [BR:ath03041]
 Complex C
  Other components
   Step II factors
    AT3G26560
SSDB
Motif
Pfam: OB_NTP_bind HA2_C S1 Helicase_C HA2_N DEAD AAA_22 AAA_19 nSTAND3 AAA_30 TsaE ABC_tran AAA_16 Sigma54_activ_2 PhoH T2SSE Flavi_DEAD
Other DBs
NCBI-GeneID: 822264
NCBI-ProteinID: NP_189288
TAIR: AT3G26560
UniProt: Q38953 A0A178VG88
Position
3:complement(9749493..9753855)
AA seq 1168 aa
MEKEELNKLNHLSLVSNVCNELETHLGSAEKVLAEFIIDLGRHSETVDEFDKNLKEAGAE
MPDYFVRSLLTTIHGIYPPKPKSEKKKEEGDDQKFKGLAIKDTKDKVKELEKEIEREAEE
RRREEDRNRDRDRRESGRDRDRDRNRDRDDRRDRHRDRERNRGDEEGEDRRSDRRHRERG
RGDGGEGEDRRRDRRAKDEYVEEDKGGANEPELYQVYKGRVTRVMDAGCFVQFDKFRGKE
GLVHVSQMATRRVDKAKEFVKRDMEVYVKVISISSDKYSLSMRDVDQNTGRDLIPLRKPS
DEDDSSRSNPSYRTKDGQVTKTGISGIRIVEENDVAPSRRPLKKMSSPERWEAKQLIASG
VLRVDEFPMYDEDGDGMLYQEEGAEEELEIEMNEDEPAFLQGQTRYSVDMSPVKIFKNPE
GSLSRAAALQSALTKERREMREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVG
LSAYDMPEWKKDAFGKTPTFGQRSKLSIQEQRESLPIYKLKKELIQAVHDNQVLVVIGET
GSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFED
CTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLMKRRLD
LRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPETDYLDAALITVLQIHLT
EPEGDILVFLTGQEEIDSACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPPPP
GKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLVITPISQASAKQRAGR
AGRTGPGKCYRLYTESAYRNEMPPTSIPEIQRINLGMTTLTMKAMGINDLLSFDFMDPPQ
PQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILTMIA
MIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFIQSR
SLRRAQDVRKQLLSIMDKYKLDVVTAGKNFTKIRKAITAGFFFHGARKDPQEGYRTLVEN
QPVYIHPSSALFQRQPDWVIYHDLVMTTKEYMREVTVIDPKWLVELAPRFFKVSDPTKMS
KRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq 3507 nt   +upstreamnt  +downstreamnt
atggaaaaagaagagctcaacaaattgaatcatctctctctcgtctccaatgtctgcaac
gaattggaaacgcatctaggatctgcagaaaaagttttggctgagttcattatcgatcta
ggtcgtcactctgagacagtcgatgaattcgataagaatcttaaggaagcaggtgcagag
atgccggattacttcgtccggtcgttgttaactacaatccacggtatttatcctccgaag
cctaagtcggagaagaagaaagaggaaggtgatgatcagaaattcaaaggcttagcgatt
aaggatactaaggataaagttaaggagctcgagaaagagattgagagagaagctgaggag
cgacggagagaagaggatcgaaatagagatagagatcggagagaatccggtagggataga
gacagagatagaaatcgtgatcgtgatgatagaagggatcgacatagggatagagagagg
aatcgtggagatgaagaaggtgaagatagaagaagtgataggaggcatagagaaagagga
cgtggtgatggtggtgaaggggaagataggcgtagagataggcgtgcgaaggatgagtat
gtggaggaagataaaggcggtgcgaatgagccggagttgtatcaggtatataaagggaga
gttactagggttatggatgcaggttgttttgttcagtttgataagtttagaggaaaagaa
ggtttagttcatgtttctcagatggctactagaagggttgataaggctaaggagtttgtg
aagagagatatggaggtttatgtgaaagttatatcgatttcgagtgataagtatagtctt
tctatgagggatgttgatcagaatacaggtagagatttgattcctttgaggaagccttca
gatgaagatgattcatccaggagtaatccgtcgtatagaactaaggatgggcaagtgact
aagactgggatttcagggatcaggattgtggaggagaatgatgttgcgccttcacgtaga
ccgttgaagaagatgagctctcctgagagatgggaagccaagcagttgattgcctctggt
gttttgagagtagatgagtttccaatgtatgatgaggatggagatgggatgctttatcaa
gaggaaggtgctgaagaagaacttgagattgagatgaatgaagacgaacctgctttctta
caagggcagactaggtactctgttgacatgtctccggttaagatcttcaaaaatccagaa
ggttctttgagtcgtgcagctgcacttcagtccgctctcactaaggagaggagagaaatg
agggaacaacagcagagaacaatgcttgactcaatccccaaggatctgaatcggccatgg
gaagaccctatgcctgaaactggtgaaaggcatcttgctcaagagcttaggggtgttggg
ttatcagcttatgacatgcctgagtggaagaaggatgcctttggtaaaactcccactttt
ggacagagatcaaagctttctattcaagagcaaagggagagccttccgatatacaagttg
aaaaaggagctgatacaggctgtgcacgataatcaagttttggtggttattggtgagact
ggatctggaaagacaacacaggtgactcagtaccttgcagaagcaggttatacaacaaaa
ggaaagattgggtgtacccagcctcgtagggttgctgcaatgtctgttgccaagagagta
gctgaggagtttggttgtcgtttaggagaggaggtagggtatgcgattcggtttgaagat
tgtactggaccggatacagtgatcaagtacatgactgatggtatgcttctcagggaaatt
ctgatagatgaaaacctctctcagtactctgtaatcatgcttgatgaagctcacgagcgg
acaatccacactgatgtgctgtttggtcttctaaagaagctgatgaaacgtagactcgac
cttcgtctgatagtcacgtctgccacattggatgcagagaagttctctgggtacttcttt
aactgcaacatttttaccattcctggaagaacatttcctgttgagatactatataccaaa
cagccagaaacagattacttggatgccgctctgatcacagtccttcagattcacttgact
gaacctgagggtgatattctggtctttttgacgggacaggaagaaatcgattctgcctgc
cagtctctgtacgagaggatgaaaggtctaggtaaaaatgttcccgaactcatcatactt
ccagtttacagtgcgcttcctagtgaaatgcagtctagaatttttgatcctccccctcct
ggtaaacggaaagtggttgtagctacaaatattgcagaagcttctttaacaatagatggg
atatactatgttgttgatcctgggtttgctaagcagaacgtgtacaatccaaagcaaggg
ctggaatcgctagtcattactccaatttcacaggcatcagcgaagcaaagggctggacgt
gctggtcgtactgggccagggaaatgttatcgtctctacacagagagcgcatatcgtaat
gaaatgcctcctacatcaatccctgaaatccaaagaatcaaccttggaatgacaaccttg
accatgaaagcaatgggcatcaatgacctgttatcgtttgacttcatggatccaccccaa
cctcaagcattgatttctgcaatggaacagttgtacagcctgggagctttggatgaggaa
ggattgttgacaaagctaggtagaaaaatggctgagtttcctcttgaaccgccgctctct
aaaatgttgctagctagtgtggatctcgggtgcagcgatgagattttaacgatgattgct
atgatccagacgggtaacatattttatagaccaagggagaagcaagcacaggcagaccaa
aaacgggcaaagtttttccagcccgaaggtgatcacttgacattgctagctgtgtatgaa
gcttggaaggctaaaaacttctcaggtccatggtgtttcgaaaacttcatacagtcaaga
tcgttacgacgtgctcaagatgtgaggaaacaacttctcagcattatggacaagtataaa
ctagacgtcgtaactgctggaaagaatttcacgaagataaggaaagcaatcacggcagga
ttcttcttccatggagcaagaaaagatccacaggaaggttacaggacgctggtggagaat
caaccggtgtatatacacccgagcagcgcgctgttccagagacaaccagactgggttata
tatcatgatcttgtgatgactacgaaagagtacatgagggaagtgactgtgattgaccca
aagtggcttgttgagttagctccaaggttcttcaaagtgtctgacccaacaaaaatgagc
aagcgtaagcgccaagaacggattgagccgttgtatgaccgttaccacgagcctaactca
tggcgtctcagcaaaaggcgtgcttga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (4)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (17)   
   Pfam (17)   
All databases (63)   

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