KEGG   Arabidopsis thaliana (thale cress): AT3G28730
Entry
AT3G28730         CDS       T00041                                 
Symbol
HMG
Name
(RefSeq) high mobility group
  KO
K09272  FACT complex subunit SSRP1/POB3
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ath03000]
    AT3G28730 (HMG)
   03036 Chromosome and associated proteins [BR:ath03036]
    AT3G28730 (HMG)
Transcription factors [BR:ath03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   HMG2-related
    AT3G28730 (HMG)
Chromosome and associated proteins [BR:ath03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    FACT complex
     AT3G28730 (HMG)
SSDB
Motif
Pfam: PH1_SSRP1-like POB3_N SSrecog HMG_box Rttp106-like_middle HMG_box_2 Protamine_like CDC45
Other DBs
NCBI-GeneID: 822505
NCBI-ProteinID: NP_189515
TAIR: AT3G28730
UniProt: Q05153 A0A178VCP0
Position
3:10784888..10788729
AA seq 646 aa
MADGHSFNNISLSGRGGKNPGLLKINSGGIQWKKQGGGKAVEVDRSDIVSVSWTKVTKSN
QLGVKTKDGLYYKFVGFRDQDVPSLSSFFQSSYGKTPDEKQLSVSGRNWGEVDLHGNTLT
FLVGSKQAFEVSLADVSQTQLQGKNDVTLEFHVDDTAGANEKDSLMEISFHIPNSNTQFV
GDENRPPSQVFNDTIVAMADVSPGVEDAVVTFESIAILTPRGRYNVELHLSFLRLQGQAN
DFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTMYPHIVMQFETDTVVESELSIS
DELMNTKFKDKLERSYKGLIHEVFTTVLRWLSGAKITKPGKFRSSQDGFAVKSSLKAEDG
VLYPLEKGFFFLPKPPTLILHDEIDYVEFERHAAGGANMHYFDLLIRLKTDHEHLFRNIQ
RNEYHNLYTFISSKGLKIMNLGGAGTADGVAAVLGDNDDDDAVDPHLTRIRNQAADESDE
EDEDFVMGEDDDGGSPTDDSGGDDSDASEGGVGEIKEKSIKKEPKKEASSSKGLPPKRKT
VAADEGSSKRKKPKKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKW
RQMSADDKEPYEAKAQVDKQRYKDEISDYKNPQPMNVDSGNDSDSN
NT seq 1941 nt   +upstreamnt  +downstreamnt
atggcggacggccactccttcaataatatctctctcagcggtcgcggtggaaagaacccg
ggtttacttaaaatcaattctggaggaattcaatggaagaaacaaggtggtggaaaagct
gtggaagttgatagatctgatattgtaagtgttagttggacgaaagtgacaaagagtaat
caattgggagtcaaaaccaaagatggattgtactacaagttcgttggatttcgagatcag
gatgttccaagtctgtctagctttttccaaagttcttatggaaaaacaccggatgagaag
caattatcagttagtggtcgtaattggggagaggtggatttacacgggaatacactaacc
tttttggttggatcaaaacaagcttttgaagtatctttagctgatgtttcacagactcag
cttcaagggaaaaatgatgttactttggagtttcatgttgatgatactgctggtgctaat
gagaaagactcgctgatggagattagttttcatattcctaattccaacactcagtttgtt
ggtgatgaaaaccgtccaccttctcaagttttcaatgacacaatcgttgcaatggctgat
gttagtcctggagttgaggatgcggtcgtcacatttgagagtattgcaatcctcacaccc
aggggtcggtacaatgtggaacttcacctttctttcttacgattgcaaggacaagctaat
gactttaaaatccagtacagtagcgttgtccgtttgttcttgcttccaaagtcaaaccaa
ccacacacgtttgttgttatctctctagacccaccaatccggaaaggtcagacaatgtac
ccccacattgttatgcagtttgaaacagacaccgttgtcgaaagtgaactgtcaattagt
gatgaacttatgaatacaaagttcaaggacaagctggagcgatcatataagggtctcatt
catgaagtattcaccaccgtgttgcgttggctgtctggtgcaaagatcactaaacctggg
aagttccgcagttcccaagatgggtttgcagtgaaatcgtctctcaaggcagaagatggg
gttctttatccactcgagaagggatttttcttcttacctaaacctccaacgcttatactt
cacgatgagattgactatgtcgagtttgaaaggcatgctgctggtggtgctaacatgcat
tactttgatcttctcataagactgaaaactgaccatgaacatctgttccgtaacattcaa
agaaatgagtatcacaatctctataccttcataagctctaagggtttgaagattatgaac
cttggaggtgcgggtaccgcagacggtgttgctgctgttcttggggataatgatgatgat
gatgctgttgaccctcatcttacgcgtatcagaaaccaagctgctgatgagagtgatgag
gaggacgaagactttgttatgggtgaggatgatgatggtggttcaccaactgatgattct
ggcggggacgactctgatgctagtgaaggcggtgtaggagagataaaagagaaatctatc
aagaaggaacctaagaaagaggcttcgtcatcgaaaggattgcctcctaagaggaaaact
gtagccgcagacgaaggcagtagtaagaggaagaagccgaagaagaagaaggatcccaac
gcaccaaaaagagcaatgtctggtttcatgttcttttcccaaatggaaagagataacata
aagaaggaacacccaggaatagcatttggagaggtgggaaaggtgcttggagataagtgg
cgtcaaatgtctgctgatgataaagagccatatgaagccaaggctcaagtcgacaagcag
cgatacaaggatgagatcagtgattacaagaaccctcagccgatgaatgtggactcagga
aacgattccgatagtaactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (3)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (40)   

Download RDF
DBGET integrated database retrieval system