KEGG   Arabidopsis thaliana (thale cress): AT3G55220
Entry
AT3G55220         CDS       T00041                                 
Symbol
SAP130b
Name
(RefSeq) Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
  KO
K12830  splicing factor 3B subunit 3
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT3G55220 (SAP130b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ath03021]
    AT3G55220 (SAP130b)
   03041 Spliceosome [BR:ath03041]
    AT3G55220 (SAP130b)
   03036 Chromosome and associated proteins [BR:ath03036]
    AT3G55220 (SAP130b)
Transcription machinery [BR:ath03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     AT3G55220 (SAP130b)
Spliceosome [BR:ath03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    AT3G55220 (SAP130b)
 Complex B
    AT3G55220 (SAP130b)
 Complex C
   U2 SnRNP specific factors
    AT3G55220 (SAP130b)
Chromosome and associated proteins [BR:ath03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     AT3G55220 (SAP130b)
    TFTC complex
     AT3G55220 (SAP130b)
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 824688
NCBI-ProteinID: NP_567016
TAIR: AT3G55220
UniProt: P0DKL4 P0DKL6 A0A178VN71
Position
3:complement(20466676..20471171)
AA seq 1214 aa
MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGA
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYV
AVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPI
FAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGG
ADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQ
TEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAI
GEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQ
IFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNAT
LVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
SIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSR
FLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFL
NSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIH
RGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTP
RKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDK
EDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGT
LLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAG
IGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLY
IFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKL
NGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFS
HLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPA
EILKKLEDARNKII
NT seq 3645 nt   +upstreamnt  +downstreamnt
atgtatctgtacagtcttactctgcagcaggcgaccggaatcgtctgcgcaatcaacggg
aacttctccggcgggaagacacaggagattgcggtagctcgtggcaagattttggatctt
ctccgtcccgacgagaacggtaagatccagacgatacactctgtagaagtatttggtgca
attagatccctagctcagtttaggttgactggtgcgcagaaggattatatcgtagtaggc
tcagattcgggtaggattgttatacttgagtacaacaaggagaagaatgtgttcgataaa
gttcaccaggagacttttggcaagtctggttgcagaagaattgtgccaggccagtacgtg
gctgttgatcccaaaggaagagctgttatgattggagcttgtgagaagcagaaattggtt
tatgttttgaacagagataccactgctaggttaactatttcttctcccttggaggctcac
aagtctcataccatttgctattctctctgcggtgtggactgcggtttcgataacccgatt
tttgcagccattgagcttgattactccgaggcagatcaggatcctactggccaagccgct
agtgaggctcagaagcatttgactttctatgagctcgatttggggctcaaccatgtctct
agaaagtggtctaaccctgttgacaatggtgccaatatgcttgttactgttcctggagga
gctgatggcccgagtggagttttggtttgcgccgagaattttgttatttacatgaatcag
ggtcatccagacgtgagggctgtgattcctagacgaactgatttgcctgctgaacgggga
gttttggttgtttctgccgccgtgcacaagcagaagacaatgttcttctttttaatccag
actgagtatggcgacgtttttaaggtcaccttggatcacaatggcgatcatgtctccgag
ttgaaggttaaatacttcgacaccattcccgtcgcatcctctatatgtgtgttgaagctg
ggattcctcttctctgcttcggaatttggaaaccatggtttgtatcagtttcaggccata
ggagaggaacctgatgtagagtcttcctcctctaatctgatggaaaccgaagaaggtttt
cagcccgtcttttttcagcctagacgacttaagaatcttgttaggattgaccaagtcgag
agtctgatgccgctcatggacatgaaagtcctaaacatttttgaggaagaaacccctcaa
atcttttcactttgcggccggggtccacgatcctctctaaggatactgagacctggtttg
gccatcactgagatggctgtctctcagcttccaggtcagccaagtgctgtgtggacggtg
aaaaagaatgtgagcgatgagtttgatgcatacatcgttgtctcttttaccaatgctact
cttgttctttcgattggtgaacaagttgaagaagttaatgacagtgggtttcttgatact
accccatccctggctgtctctctgatcggcgatgattctctcatgcaagtccatcccaat
ggtatccgccacataagggaagatggacgcattaacgaatggagaactcctggcaagagg
tcaattgttaaagttgggtataatcggcttcaagtggtcattgcattgagcgggggagag
cttatatactttgaggcagatatgactggccagctgatggaggtggagaagcatgaaatg
tctggtgatgtggcttgcctggacattgcccctgttcctgaaggaagaaaaaggtctcgc
tttcttgctgtgggatcttatgataatactgtgcgcattctatctctggatcctgacgac
tgtctgcagattctcagcgtgcaaagtgtctcttcagctccggagtctctgctattcctc
gaagttcaggcatcgattggtggagatgatggtgctgatcacccggcaaatctcttcctc
aattctgggctgcagaatggtgttcttttcagaactgtggtggacatggtgactggtcag
ctttcggattctcgctcccggttcttggggctgaagcctcccaagctattctccatttct
gtgagaggccggtctgcaatgctgtgtttgtctagccgaccttggcttggttatattcac
cggggacacttccatttgacgcctctgtcttacgagactctggaatttgctgcccccttt
tcatctgatcagtgcgctgaaggtgttgtctctgtcgctggggatgctctgagaattttt
atgattgatcgtcttggtgaaacattcaacgaaacagtggtccctctgaggtacacgcct
agaaagtttgttctccatcccaagcggaagttgttggttattatcgagagtgaccaggga
gcattcaccgcagaagagcgtgaagctgcaagaaaggagtgcttcgaggctggtggagtg
ggagaaaatggcaatggcaatgcagatcagatggagaatggtgcggatgatgaagataag
gaagacccgctttctgatgagcagtacggttatccaaaagcagagtctgaaaagtgggtc
tcttgcatcagagttcttgatcccaagacagctacgacaacttgtctcctggaacttcag
gacaacgaagctgcatacagtgtctgtacggtgaatttccatgataaagagtatggtaca
ctgttggctgttggtacggtcaaagggatgcagttctggcccaagaagaatctagtggct
gggttcatacatatttataggtttgtggaggatgggaaatctcttgagcttcttcataag
acgcaagtagaaggtgttcctcttgctctgtgccagttccaaggaagactgctggcaggg
atcggacctgtcctcagattgtatgatttggggaaaaagagactgcttaggaaatgtgaa
aacaagctctttccaaacaccattatctctatccaaacttaccgtgaccgtatatacgtt
ggtgacattcaggagtctttccattactgcaagtacaggcgcgacgagaatcagctgtac
atatttgcggatgactgcgtgccgaggtggctgacagcatcgcaccatgtggatttcgat
accatggcaggtgcagataagtttgggaatgtgtattttgtgcggttgcctcaggatctg
tcggaggagatagaagaagacccgactggcgggaagatcaagtgggagcaaggaaagctg
aatggagcaccgaacaaagtggatgagatagtacagttccatgttggggacgttgtgacg
tgcttgcagaaagcttcgatgatcccaggtggatcggaatcgataatgtatggaacagtg
atgggtagcataggggcattacatgctttcacatcccgtgatgatgtggatttcttctct
catctggagatgcacatgaggcaggagtatcctcctctctgcgggagagaccacatggct
tacagatctgcatattttccggtcaaggacgtgatagatggagatctgtgtgagcagttc
ccgacactcccaatggacttgcagaggaaaatagcagacgagctggatagaacacctgcg
gagattctgaagaagctcgaagacgcaaggaacaagatcatttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (6)   
   UniProt (3)   
   SWISS-PROT (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (34)   

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