KEGG   Arabidopsis thaliana (thale cress): AT4G01000
Entry
AT4G01000         CDS       T00041                                 
Name
(RefSeq) Ubiquitin-like superfamily protein
  KO
K25059  replication stress response regulator SDE2
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ath03041]
    AT4G01000
   03032 DNA replication proteins [BR:ath03032]
    AT4G01000
   03400 DNA repair and recombination proteins [BR:ath03400]
    AT4G01000
Spliceosome [BR:ath03041]
 Complex C
  Other components
   Complex C specific factors
    AT4G01000
DNA replication proteins [BR:ath03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    AT4G01000
DNA repair and recombination proteins [BR:ath03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    AT4G01000
SSDB
Motif
Pfam: SDE2_2C Sde2_N_Ubi ubiquitin Cwf_Cwc_15 DNA_pack_C
Other DBs
NCBI-GeneID: 826414
NCBI-ProteinID: NP_001319838
TAIR: AT4G01000
UniProt: Q9SV28
Position
4:complement(431516..434029)
AA seq 415 aa
MADQSSKPLQFFVRLLDGKSLTLSFSSPLAYGEQIKQRIFEQTKIPTHLQRLISGGYQIS
DGSAISQPDATVNLVLSLRGGKGGFGSLLRGGGMKAGQKKTNNFDACRDMSGRRLRHVNA
ENRLQEWKDGEEGRNLEKKALEYLKKQSNKVKQGVGNGATQKYVNKYKEESDKCILAVDL
ALNESFKNGKRKAKIGAESEKKKRLKIWKGKRAVEDSDSDDSDDEEDEKSVVLNNGGHDG
DSSGKSSCNSGSEEENDAVMHRSFDVVKEEITGVQGIIEEEMNDLPVSVAVDDANTVADE
MDQLEKVEKSSGDAGKNLVDVACETLITSAAVKREGTAKETVSVDAVCCKPVEPLNFDDF
NSPADMEVLGMERLKTELQSRGLKCGGTLRERAARLFLLKSTPLDKLPKKLLAKK
NT seq 1248 nt   +upstreamnt  +downstreamnt
atggcggatcagagttctaagccgttgcagtttttcgtgagactactcgacggaaaatca
ttaaccctaagtttctcctctccgttagcttatggcgagcagatcaagcagcggatcttc
gagcaaacgaagatcccgacgcatctacagagattgataagcggaggataccaaatctcc
gatggatccgcgatttctcagcctgacgccaccgtgaatcttgtcctttcactccgtgga
ggtaaaggaggattcggatcgttacttcgtggtgggggtatgaaagctgggcagaagaag
acgaacaacttcgatgcttgtagggatatgagtggacggagattgaggcatgtaaacgca
gagaataggcttcaggagtggaaggatggtgaagaagggaggaaccttgagaaaaaggct
cttgagtatctgaagaagcaatccaataaagtgaaacaaggtgttggaaatggagctacg
cagaagtatgttaataagtataaggaagaatctgataagtgtattttggctgttgatttg
gctttgaatgaatctttcaagaatgggaagagaaaagcgaagattggtgctgaatctgag
aagaagaagcgtctcaaaatatggaaggggaagagagctgttgaagatagtgacagtgat
gatagcgacgacgaggaagatgagaaatctgttgttctaaacaatggtggtcatgatggt
gattcatctggtaaatcttcatgcaatagtggttcagaggaagagaacgacgctgtaatg
caccgcagtttcgatgtggttaaggaagagatcaccggtgttcaagggattattgaagag
gagatgaatgatttacctgtttctgttgctgttgatgatgctaatactgttgctgatgaa
atggatcaacttgaaaaggtggagaaatcaagtggagacgcagggaagaatctggttgat
gtagcttgtgaaacgttaattacgtctgcagctgttaagagagaaggaactgcgaaagaa
acagtgtctgttgatgcagtatgttgcaaacctgttgaaccacttaactttgatgacttc
aattcaccagcagacatggaggttttggggatggagagattgaagactgagcttcagtca
cgtggtctgaagtgcggagggacattgcgagagcgagctgcgaggctatttttacttaaa
tcaacgccactcgataagctcccaaagaaattactggccaagaaatga

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Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (33)   

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