KEGG   Arabidopsis thaliana (thale cress): AT4G13930
Entry
AT4G13930         CDS       T00041                                 
Symbol
SHM4
Name
(RefSeq) serine hydroxymethyltransferase 4
  KO
K00600  glycine hydroxymethyltransferase [EC:2.1.2.1]
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath00260  Glycine, serine and threonine metabolism
ath00460  Cyanoamino acid metabolism
ath00630  Glyoxylate and dicarboxylate metabolism
ath00670  One carbon pool by folate
ath01100  Metabolic pathways
ath01110  Biosynthesis of secondary metabolites
ath01200  Carbon metabolism
ath01230  Biosynthesis of amino acids
ath01240  Biosynthesis of cofactors
Module
ath_M00532  Photorespiration
Brite
KEGG Orthology (KO) [BR:ath00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00630 Glyoxylate and dicarboxylate metabolism
    AT4G13930 (SHM4)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    AT4G13930 (SHM4)
  09106 Metabolism of other amino acids
   00460 Cyanoamino acid metabolism
    AT4G13930 (SHM4)
  09108 Metabolism of cofactors and vitamins
   00670 One carbon pool by folate
    AT4G13930 (SHM4)
Enzymes [BR:ath01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.2  Hydroxymethyl-, formyl- and related transferases
    2.1.2.1  glycine hydroxymethyltransferase
     AT4G13930 (SHM4)
SSDB
Motif
Pfam: SHMT
Other DBs
NCBI-GeneID: 827027
NCBI-ProteinID: NP_193129
TAIR: AT4G13930
UniProt: O23254 A0A654FNZ9
Structure
Position
4:complement(8047692..8050157)
AA seq 471 aa
MEPVSSWGNTSLVSVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS
EGIPGNRYYGGNEFIDEIENLCRSRALEAFHCDPAAWGVNVQPYSGSPANFAAYTALLQP
HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFTTGYIDYDKLEEKALDF
RPKLLICGGSAYPRDWDYARFRAIADKVGALLLCDMAHISGLVAAQEAANPFEYCDVVTT
TTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPALQGGPHNHQIGALA
VALKQANTPGFKVYAKQVKANAVALGNYLMSKGYQIVTNGTENHLVLWDLRPLGLTGNKV
EKLCDLCSITLNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLSRAVTLTL
DIQKTYGKLLKDFNKGLVNNKDLDQLKADVEKFSASYEMPGFLMSEMKYKD
NT seq 1416 nt   +upstreamnt  +downstreamnt
atggaaccagtctcttcatggggtaacacctctctcgtctccgtagatccagagatccac
gacctaatcgagaaggagaaacgtcggcaatgtcgaggaatcgaacttatcgcttccgag
aatttcacttccttcgccgtcatcgaagctctcggaagtgccttaaccaacaaatactcc
gaaggtattcctggtaatcgttattacggaggtaacgaattcatcgatgagatcgagaat
ctttgccgttcaagagctctcgaagctttccattgtgatccagcagcgtggggcgttaat
gttcagccgtattctggatctccggcaaatttcgctgcttacacggctttgcttcagcct
cacgatcgtatcatggggcttgatttgccttcaggtggtcatttgactcatggttactat
acatctggtggtaagaagatctctgcgacttcgatctactttgagagtcttccgtataag
gtgaatttcaccactggttacattgattacgataagcttgaagagaaggcgttggatttc
aggcctaagttgcttatctgtggtggtagtgcgtatcctagggattgggattacgctaga
tttagagctattgctgataaggttggagctcttttgctttgtgacatggctcacatcagt
ggtctcgttgctgctcaggaagctgcaaacccatttgagtactgtgacgttgtgacaacc
acaacccacaagagtttgaggggtccaagggctggtatgattttctacaggaagggtcca
aaaccaccaaagaagggtcaacccgagggtgcagtctatgattttgaggacaaaatcaac
tttgctgtattccctgcgcttcaaggtggtcctcacaatcaccagattggtgctctagct
gttgcgttgaagcaggctaatactcctgggttcaaggtctacgcaaaacaagtgaaagcc
aatgctgttgcccttggaaactacctaatgagcaagggttaccagattgtgaccaatgga
actgagaaccaccttgttctctgggatcttcgccctcttggattgaccggaaacaaggtt
gagaagctctgcgatctgtgcagcattacattgaacaagaacgcagtatttggagacagt
agtgctcttgctcctggaggtgtaagaatcggtgcacccgcgatgacatcgagaggattg
gtggagaaggactttgagcagataggagaattcctgagccgtgcagtgacactgacgttg
gacatccaaaagacatacggtaagttgttgaaggacttcaacaagggtttggtgaacaac
aaagatctcgatcagctcaaggctgatgtcgagaagttctcggcgtcttatgagatgcct
ggattcctcatgtctgagatgaagtacaaggattag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (14)   
   KEGG PATHWAY (9)   
   KEGG MODULE (5)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (2)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (2)   
   PDB (2)   
Protein domain (1)   
   Pfam (1)   
All databases (58)   

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