KEGG   Arabidopsis thaliana (thale cress): AT4G20440
Entry
AT4G20440         CDS       T00041                                 
Symbol
smB
Name
(RefSeq) small nuclear ribonucleoprotein associated protein B
  KO
K11086  small nuclear ribonucleoprotein B and B'
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT4G20440 (smB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT4G20440 (smB)
   03041 Spliceosome [BR:ath03041]
    AT4G20440 (smB)
   03032 DNA replication proteins [BR:ath03032]
    AT4G20440 (smB)
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     AT4G20440 (smB)
Spliceosome [BR:ath03041]
 Complex A
  U1 snRNP components
   Sm proteins
    AT4G20440 (smB)
  U2 snRNP components
    AT4G20440 (smB)
 Complex B
  U1 snRNP components
    AT4G20440 (smB)
  U4/U6.U5 tri-snRNP components
    AT4G20440 (smB)
 Complex C
  U2 snRNP components
    AT4G20440 (smB)
DNA replication proteins [BR:ath03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     AT4G20440 (smB)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 827792
NCBI-ProteinID: NP_001329619
TAIR: AT4G20440
UniProt: Q9SUN5 A0A384KCA8
Position
4:complement(11022036..11023851)
AA seq 257 aa
MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN
EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP
LVQAQPGLSGPVRGVGGPAPGMMQPQISRPPQLSAPPIIRPPGQMLPPPPFGGQGPPMGR
GPPPPYGMRPPPQQFSGPPPPQYGQRPMIPPPGGMMRGPPPPPHGMQGPPPPRPGMPPAP
GGFAPPRPGMPPHNQQQ
NT seq 774 nt   +upstreamnt  +downstreamnt
atgtcgatgtcgaagagttcaaagatgcttcagttcatcaactacaggatgcgagtgacg
atccaagacggaagacagctcgttgggaagttcatggcgtttgaccgtcacatgaacctc
gttctcggcgattgcgaggagtttcgtaagcttccaccagctaaagggaagaagatcaac
gaagagcgtgaagatcgccgtacgctaggtttagtgttgcttagaggtgaagaagttatc
tcaatgactgtcgaaggaccacctcctcctgaagaatctcgtgctaaagctggctctgca
gctgctgttgctggtccaggaattggccgtgccgctgggcgtggagttcctactggtccg
ttagttcaagctcagcctggtttatctggtcctgttcgtggtgttggtggacctgctccg
ggaatgatgcagcctcagatctctcgtccaccacagctttcagctcctccgattattcga
cctccgggacagatgttgccaccgcctccttttggtggtcaaggtcctcctatgggaaga
ggtcctccaccgccttatggtatgaggccaccgccacagcagttttctggaccaccaccg
cctcagtatgggcaaaggccaatgattcctcctcctggtggtatgatgagaggacctcct
cctccacctcatggaatgcaaggacctcctccgcctcgccctggaatgcctcctgctcct
ggtggttttgctccaccgcgtcctggcatgccaccacataatcagcagcagtga

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