KEGG   Arabidopsis thaliana (thale cress): AT4G30220
Entry
AT4G30220         CDS       T00041                                 
Symbol
RUXF
Name
(RefSeq) small nuclear ribonucleoprotein F
  KO
K11098  small nuclear ribonucleoprotein F
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT4G30220 (RUXF)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT4G30220 (RUXF)
   03041 Spliceosome [BR:ath03041]
    AT4G30220 (RUXF)
   03032 DNA replication proteins [BR:ath03032]
    AT4G30220 (RUXF)
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     AT4G30220 (RUXF)
Spliceosome [BR:ath03041]
 Complex A
  U1 snRNP components
   Sm proteins
    AT4G30220 (RUXF)
  U2 snRNP components
    AT4G30220 (RUXF)
 Complex B
  U1 snRNP components
    AT4G30220 (RUXF)
  U4/U6.U5 tri-snRNP components
    AT4G30220 (RUXF)
 Complex C
  U2 snRNP components
    AT4G30220 (RUXF)
DNA replication proteins [BR:ath03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     AT4G30220 (RUXF)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 829145
NCBI-ProteinID: NP_194751
TAIR: AT4G30220
UniProt: Q9SUM2 A0A654FU79 Q0WT08
Position
4:complement(14802931..14804461)
AA seq 88 aa
MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNL
GEILIRCNNVLYVRGVPEDEELEDADQD
NT seq 267 nt   +upstreamnt  +downstreamnt
atggcgactattccggttaacccgaaaccattcttgaacaacttgaccggcaagactgtt
atcgtcaagcttaaatggggaatggaatacaaaggttttctcgcctctgttgactcctac
atgaacttgcagctgggaaacaccgaagaatatattgatggacaattgacagggaacctt
ggagagatcttgatcaggtgcaacaatgttttgtatgtccgtggtgtgccagaagatgaa
gagcttgaagacgctgatcaagactaa

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