KEGG   Arabidopsis thaliana (thale cress): AT4G34640
Entry
AT4G34640         CDS       T00041                                 
Symbol
SQS1
Name
(RefSeq) squalene synthase 1
  KO
K00801  farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21]
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath00100  Steroid biosynthesis
ath00909  Sesquiterpenoid and triterpenoid biosynthesis
ath01100  Metabolic pathways
ath01110  Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:ath00001]
 09100 Metabolism
  09103 Lipid metabolism
   00100 Steroid biosynthesis
    AT4G34640 (SQS1)
  09109 Metabolism of terpenoids and polyketides
   00909 Sesquiterpenoid and triterpenoid biosynthesis
    AT4G34640 (SQS1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01006 Prenyltransferases [BR:ath01006]
    AT4G34640 (SQS1)
Enzymes [BR:ath01000]
 2. Transferases
  2.5  Transferring alkyl or aryl groups, other than methyl groups
   2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
    2.5.1.21  squalene synthase
     AT4G34640 (SQS1)
Prenyltransferases [BR:ath01006]
 Terpene biosynthesis
  Squalene/phytoene synthase
   AT4G34640 (SQS1)
SSDB
Motif
Pfam: SQS_PSY DUF2615
Other DBs
NCBI-GeneID: 829616
NCBI-ProteinID: NP_195190
TAIR: AT4G34640
UniProt: P53799 A0A5S9XYM7
Position
4:16538189..16542024
AA seq 410 aa
MGSLGTMLRYPDDIYPLLKMKRAIEKAEKQIPPEPHWGFCYSMLHKVSRSFSLVIQQLNT
ELRNAVCVFYLVLRALDTVEDDTSIPTDEKVPILIAFHRHIYDTDWHYSCGTKEYKILMD
QFHHVSAAFLELEKGYQEAIEEITRRMGAGMAKFICQEVETVDDYDEYCHYVAGLVGLGL
SKLFLAAGSEVLTPDWEAISNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWGKYAD
KLEDLKYEENTNKSVQCLNEMVTNALMHIEDCLKYMVSLRDPSIFRFCAIPQIMAIGTLA
LCYNNEQVFRGVVKLRRGLTAKVIDRTKTMADVYGAFYDFSCMLKTKVDKNDPNASKTLN
RLEAVQKLCRDAGVLQNRKSYVNDKGQPNSVFIIMVVILLAIVFAYLRAN
NT seq 1233 nt   +upstreamnt  +downstreamnt
atggggagcttggggacgatgctgagatatccggatgacatatatccgctcctgaagatg
aaacgagcgattgagaaagcggagaagcagatccctcctgagccacactggggtttctgc
tattcgatgctccacaaggtttctcgaagcttttctctcgttattcagcaactcaacacc
gagctccgtaacgccgtgtgtgtgttctacttggttctccgagctcttgatactgttgag
gatgatactagcataccaactgatgaaaaggttcccatcctgatagcttttcaccggcac
atatacgatactgattggcattattcatgtggtacgaaggagtacaagattctaatggac
caatttcaccatgtttctgcagcttttttggaacttgaaaaagggtatcaagaggctatc
gaggaaattactagaagaatgggtgcagggatggccaagtttatctgccaagaggtagaa
actgttgatgactacgatgaatactgccactatgttgctgggcttgttggtttaggtttg
tcgaaactcttcctcgctgcaggatcagaggttttgacaccagattgggaggcgatttcc
aattcaatgggtttatttctgcagaaaacaaacattatcagagattatcttgaggacatt
aatgagataccaaaatcccgcatgttttggcctcgcgagatttggggcaaatatgctgac
aagcttgaggatttaaaatacgaggagaacacaaacaaatccgtacagtgcttaaatgaa
atggttaccaatgcgttgatgcatattgaagattgcctgaaatacatggtttccttgcgt
gatccttccatatttcggttctgtgccatccctcagatcatggcgattggaacacttgca
ttatgctataacaatgaacaagtattcagaggcgttgtgaaactgaggcgaggtcttact
gctaaagtcattgatcgtacaaagacaatggctgatgtctatggtgctttctatgatttt
tcctgcatgctgaagacaaaggttgacaagaacgatccaaatgccagtaagacactaaac
cgacttgaagccgttcagaaactctgcagagacgctggagttcttcaaaacagaaaatct
tatgttaatgacaaaggacaaccaaacagtgtctttattataatggttgtgattctactg
gccatagtctttgcatatctcagagcaaactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (6)   
   KEGG PATHWAY (4)   
   KEGG MODULE (2)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (4)   
   KEGG ENZYME (1)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (38)   

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