KEGG   Arabidopsis thaliana (thale cress): AT5G01310
Entry
AT5G01310         CDS       T00041                                 
Symbol
APTX
Name
(RefSeq) APRATAXIN-like protein
  KO
K10863  aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    AT5G01310 (APTX)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ath03400]
    AT5G01310 (APTX)
Enzymes [BR:ath01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.1  In phosphorus-containing anhydrides
    3.6.1.70  guanosine-5'-diphospho-5'-[DNA] diphosphatase
     AT5G01310 (APTX)
    3.6.1.71  adenosine-5'-diphospho-5'-[DNA] diphosphatase
     AT5G01310 (APTX)
    3.6.1.72  DNA-3'-diphospho-5'-guanosine diphosphatase
     AT5G01310 (APTX)
DNA repair and recombination proteins [BR:ath03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     AT5G01310 (APTX)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Other NHEJ factors
     AT5G01310 (APTX)
SSDB
Motif
Pfam: DcpS_C AAA_33 zf-C2HE Macro HIT AAA_18 AAA_29 AAA_16 AAA_24 AAA_22 AAA AAA_19 AAA_17 nSTAND3 ABC_tran G-alpha AAA_25 Sigma54_activ_2 ATP_bind_1
Other DBs
NCBI-GeneID: 830940
NCBI-ProteinID: NP_195751
TAIR: AT5G01310
UniProt: A0A2H1ZE58
Position
5:126204..129150
AA seq 710 aa
MEVQIEESGKNQTSPESIEADKAKQIVVLLIGPPGSGKSTFCDTAMRSSHRPWSRICQDI
VNNGKAGTKAQCLKMATDSLREGKSVFIDRCNLDREQRSEFIKLGGPEFEVHAVVLELPA
QVCISRSVKRTGHEGNLQGGRAAAVVNKMLQSKELPKVNEGFSRIMFCYSDADVDNAVNM
YNKLGPMDTLPSGCFGEKKLDTKSQPGIMKFFKKVSALPASSSNEATNTTRKADEMTANV
RVSPVKLGSADIVPTLAFPSISTADFQFDLEKASDIIVEKAEEFLSKLGTARLVLVDLSR
GSKILSLVKAKASQKNIDSAKFFTFVGDITKLRSEGGLHCNVIANATNWRLKPGGGGVNA
AIFKAAGPDLETATRVRANTLLPGKAVVVPLPSTCPLHNAEGITHVIHVLGPNMNPNRPD
NLNNDYTKGCKTLREAYTSLFEGFLSVVQDQSKLPKRSSQTAVSDSGEDIKEDSERNKKY
KGSQDKAVTNNLESESLEDTRGSGKKMSKGWNTWALALHSIAMHPERHENVVLEYLDNIV
VINDQYPKARKHVLVLARQESLDGLEDVRKENLQLLQEMHNVGLKWVDRFQNEDASLIFR
LGYHSVPSMRQLHLHVISQDFNSDSLKNKKHWNSFTTSFFRDSVDVLEEVNSQGKANVAS
EDLLKGELRCNRCRSAHPNIPKLKSHVRSCHSQFPDHLLQNNRLVARAET
NT seq 2133 nt   +upstreamnt  +downstreamnt
atggaagtgcaaattgaagaatctggtaaaaatcaaacctctccggaatcaattgaagca
gacaaagcgaagcagatagtggtgcttctgattggtccaccaggaagcggcaaatcgacg
ttttgtgacaccgcaatgcgttcctctcaccgcccttggtctcgtatctgccaggacatt
gttaacaatggcaaagctggaacaaaggctcagtgtttaaagatggctacagattctctt
agggaaggcaagagcgtctttatagacagatgcaatcttgacagggagcaacgttcagag
tttattaagcttggtggtcctgagttcgaagttcatgcagtggttctggagcttcctgct
caggtttgtatatctagatcagttaaaagaactggtcatgaaggaaatctacaaggtgga
agagctgcagctgttgtgaataagatgcttcagagtaaggaacttcccaaagtgaatgaa
gggttttctcggattatgttttgttacagtgacgctgatgttgataatgctgttaacatg
tataacaagcttggtccaatggatacccttccttctggctgttttggcgaaaaaaaatta
gatactaaaagccaacccggtataatgaagttctttaagaaagtcagtgctctgcctgct
tcatcttctaatgaagctactaacacaactcggaaagctgatgaaatgacagcaaatgtc
cgagtttcgccagtcaagcttggttctgctgatattgtacctacactggcattcccatca
atttcgactgcggattttcagtttgatcttgaaaaggcttctgatatcattgtggagaaa
gcagaggagttcttgtctaaacttgggactgcgcgtctcgtcttggtggacttgagccgc
gggtcaaagattctatctctggtcaaggctaaggcttctcagaagaacattgattcagcg
aaattcttcacatttgttggggacataactaagcttcgttctgaaggtggtctacactgt
aatgtcatagctaatgctactaactggcggcttaaacctggaggtggaggtgtgaatgca
gcaatattcaaagctgctggtccagatcttgagactgcgacaagagtacgagcaaacact
cttcttcctggaaaagccgtggtagttcctcttccttctacttgtccattacacaatgca
gaaggaattacacatgtcatacatgttctaggaccaaacatgaacccaaaccgaccagac
aaccttaacaacgactacaccaaggggtgcaaaactctccgggaagcttacacatctcta
tttgaaggttttctatcagtagtacaggatcaatcgaagttgcccaaacgaagcagtcaa
acagctgtgtcagattctggtgaggatattaaggaagactctgagagaaacaaaaagtac
aaaggatcacaagataaggccgtaactaataatttggaatcagagtctctggaggacaca
agaggcagtggaaagaagatgagtaaaggatggaacacatgggcattggctctccacagc
atcgcgatgcacccagagagacacgagaatgtcgtgcttgaatatttagacaacatcgtt
gtcataaacgaccagtacccaaaggcgcggaaacacgtgctagtactggcgagacaggag
agtctagatgggctagaagatgttcgcaaagagaatcttcaacttctgcaggaaatgcac
aatgttggtctgaaatgggttgatagattccagaacgaggatgcatctcttatcttccgc
cttggatatcactcggttccctcgatgcgacaactacacttacacgttataagccaagac
tttaattcagatagtttgaagaacaagaaacactggaactctttcacgacctcgttcttc
cgtgactcagttgatgtacttgaagaggtcaacagccaaggcaaggccaatgtggcgagc
gaagatctgttgaaaggtgagctgcgttgcaatcggtgtagaagcgcacacccaaatatt
ccaaaacttaaatcacatgtcagaagctgccattctcaatttccagaccatttactccaa
aacaatcgccttgtggctagagcagagacgtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (3)   
   KEGG ENZYME (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (19)   
   Pfam (19)   
All databases (53)   

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