KEGG   Arabidopsis thaliana (thale cress): AT5G09880
Entry
AT5G09880         CDS       T00041                                 
Name
(RefSeq) Splicing factor, CC1-like protein
  KO
K13091  RNA-binding protein 23/39
Organism
ath  Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:ath00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ath03041]
    AT5G09880
Spliceosome [BR:ath03041]
 Common components
  Common spliceosomal components
   General mRNP proteins
    AT5G09880
SSDB
Motif
Pfam: RRM_1 RBM39linker RRM_7 RRM_occluded
Other DBs
NCBI-GeneID: 830848
NCBI-ProteinID: NP_568220
TAIR: AT5G09880
UniProt: Q93Y25
Position
5:complement(3081389..3085291)
AA seq 527 aa
MEFDEYEYLEKTVEEGAGSNKKKEESGNERSERSYRKREGGERQGEEGGEEERVSSRSKK
SRGDGEENGGGKRDRERERHRSSRDKDRERDKVREGSRDKESDRERSSKERDRSDRDKPR
DRERREREKRSSSRSRREEKEPEVVERGSRRHRDKKDEPEADPERDQRTVFAYQMPLKAT
ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLFLGQPVMV
KPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDP
ETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVSSVSDHIGTQDSAPKSADFDD
DDGGGLALNAQSRAMLMQKLDRSGIATSIVGSLGVPGLNGAAFNQPGMNPSFPTSVLPTT
AIPSFVNEHVGLPSECLLLKNMFDPATETEPNFDLEIRDDVADECSKYGPVNHIYVDKNS
AGFVYLRFQSVEAAAAAQRAMHMRWFAQKMISATFMPPHEYEAKAKA
NT seq 1584 nt   +upstreamnt  +downstreamnt
atggagtttgacgaatacgagtacctggagaagacggttgaggaaggagctgggtcgaat
aagaaaaaggaagagagtgggaacgagaggagcgagaggagttacagaaagagagaagga
ggagagaggcagggggaagaaggaggtgaagaagagcgggttagcagtcggagtaagaag
tctcgcggagacggcgaagagaacggtggtggtaagagggatcgggagagagagaggcat
aggagcagcagagacaaggatagggagagggataaggttagagaaggatcgagagataaa
gagagcgatcgagagaggagtagcaaggagagagataggagcgatagagacaaaccccga
gacagagagagaagagagagggagaagaggagcagcagtagatctcggagggaagagaag
gaacccgaagtagtggaaagaggaagcagaagacacagggacaagaaagatgagcctgaa
gcagatccagagagagatcaaagaactgtttttgcatatcagatgcctcttaaagctacg
gagagagatgtttatgagttcttctccaaagcgggcaaggtgagggatgtgcgattgatc
atggacagaaattcaagacgatcaaaaggcgtcgggtatattgagttttatgacgtgatg
tcagttccaatggccatagctctgtctggacaactgtttcttggacaacctgtgatggtt
aagccctctgaagctgaaaagaatctggcccaatctaacagcactacggttggtggtaca
ggccctgcagataggaaactctatgtgggtaacctgcatttcaacatgtcggaactgcag
cttagacagatttttgaggcatttggtcccgttgagcttgttcagctaccacttgatcct
gaaactgggcagtgcaaaggatttggatttattcagtttgttcaacttgaacattcaaag
gcagcacaaattgccttaaatggaaagctggagattgctggtaggacaatcaaggtttct
tccgtctctgatcatattggtacacaagattctgctccaaaatctgctgattttgatgat
gatgatggaggtggactggctttaaatgcacaatctagggctatgcttatgcagaagctg
gatcgttcaggtatcgctacaagcattgtgggctctcttggagtaccagggctaaatgga
gcagcgtttaatcaaccaggcatgaatcctagtttcccaacatcagtgcttccgacaaca
gcaatcccttcttttgtcaatgaacatgttggtctgccaagcgaatgccttctattgaag
aatatgtttgatcctgcaaccgagacggaaccaaactttgatcttgaaatcagagacgac
gttgcggatgaatgttcaaagtatggcccagtcaaccatatatacgtagacaagaacagt
gcggggtttgtgtatctgaggtttcaatcagtggaggcagcagcagcagctcaaagagca
atgcatatgagatggtttgcacaaaagatgatatctgcaactttcatgcctcctcatgaa
tatgaagccaaagccaaggcctga

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