KEGG   Arabidopsis thaliana (thale cress): AT5G22010
Entry
AT5G22010         CDS       T00041                                 
Symbol
RFC1
Name
(RefSeq) replication factor C1
  KO
K10754  replication factor C subunit 1
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03030  DNA replication
ath03410  Base excision repair
ath03420  Nucleotide excision repair
ath03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AT5G22010 (RFC1)
   03410 Base excision repair
    AT5G22010 (RFC1)
   03420 Nucleotide excision repair
    AT5G22010 (RFC1)
   03430 Mismatch repair
    AT5G22010 (RFC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ath03032]
    AT5G22010 (RFC1)
   03400 DNA repair and recombination proteins [BR:ath03400]
    AT5G22010 (RFC1)
DNA replication proteins [BR:ath03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    AT5G22010 (RFC1)
DNA repair and recombination proteins [BR:ath03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     AT5G22010 (RFC1)
SSDB
Motif
Pfam: RFC1 BRCT AAA PTCB-BRCT AAA_22 AAA_30 AAA_19 DNA_pol3_delta Rad17 AAA_5 AAA_18 BRCT_2 nSTAND3 Gp44_lid RuvB_N Sigma54_activ_2 Zeta_toxin AAA_16 AAA_assoc_2 AAA_14 AAA_17 AAA_28 VbhA NTPase_1 TsaE
Other DBs
NCBI-GeneID: 832261
NCBI-ProteinID: NP_680188
TAIR: AT5G22010
UniProt: Q9C587
Position
5:complement(7280321..7287434)
AA seq 956 aa
MSDIRKWFMKAHEKGNGSAPKSTSSKAGPVKNAAETAPIKSEQASEDLETADRRKTSKYF
GKDKTKVKDEKEVEAIPAKRKLKTESDDLVKPRPRKVTKVVDDDDDDFDVPISRKTRDTT
PSKKLKSGSGRGIASKTVDNDDDDDGEDKETPLKSAGRGRGGRAAPGASTGGRGRGGGRG
GFMNFGERKDPPHKGEKEVPEGTPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGS
VSKKTTYLLCDEDIGGRKSEKAKELGTKFLTEDGLFDIIRSSKPVKKSLPERSNKGTEKI
CAPPKTSPQKEETRGKPLAKSSPKKVPPAKGKNKIIETSLPWTEKYRPKVPNEIVGNQSL
VTQLHNWLSHWHDQFGGTGSKGKGKKLNDAGSKKAVLLSGTPGIGKTTSAKLVSQMLGFQ
AVEVNASDSRGKANSNIAKGIGGSNANSVKELVNNEAMAANFDRSKHPKTVLIMDEVDGM
SAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLPLNYRKPTKQQMAKRLMH
IAKAEGLEINEIALEELAERVNGDIRLAVNQLQYMSLSMSVIKYDDIRQRLLSSAKDEDI
SPFTAVDKLFGYNGGKLRMDERIDLSMSDPDLVPLLIQENYLNYRPSGKDEAKRMDLLAR
AAESIADGDIINVQIRRYRQWQLSQSCCVASSILPASLLHGSREVLEQGERNFNRFGGWL
GKNSTAGKNRRLMEDLHVHVLASRESSAGRETLRVDYLPLLLSRLTSPLQTLPKDEAVSE
VVDFMNSYSISQEDFDTILELGKFKGRENPMEGVPPPVKAALTKKYNEMNKTRMVRVADM
VQLPGVKKAPKKRIAAMLEPTVDSLRDEDGEPLADNEEGNGSDAEEDSEEATDGEKLESN
LKNLNARGIQVELDLKGAGSSGSRKAAGKGRGRGKAADTSAEKKATGRGSGAKRKR
NT seq 2871 nt   +upstreamnt  +downstreamnt
atgtcggatattaggaagtggtttatgaaagctcatgaaaaagggaatggaagtgctccg
aaatcgacgtcttccaaggcaggtcctgtgaagaatgctgcagagactgcaccaataaaa
tcagagcaggctagtgaagacttggaaactgctgatagaagaaaaacgagcaagtatttt
ggtaaagataaaacaaaagttaaagatgagaaagaggtggaagcaattcctgccaagagg
aaacttaagactgagtctgatgatttagtcaagcctcgtccaagaaaggttacaaaggtt
gttgatgatgatgatgatgattttgatgtacctatttcaaggaagactcgtgataccact
cccagcaaaaaactaaagtcggggtcaggtagaggaattgcaagtaaaactgttgataac
gacgatgatgatgatggtgaagataaggagactcctctaaaatctgccggaagaggccgt
ggcggtagagctgctccaggggcctcaactggtggaagaggtagaggtggagggcgaggt
ggatttatgaattttggtgaaaggaaagacccaccgcataaaggagaaaaggaagttcct
gaaggcacccctgattgcttagctggattgacatttgtaattagcggaacacttgacagt
ttagaaagagaagaagcagaagatctgattaagcggcatggtggtcgtattacaggctct
gttagcaagaaaacgacctaccttttgtgtgatgaagacattggcggaaggaaatctgaa
aaagctaaagagctgggcactaagttccttacagaggatggcctatttgacataatccgg
tcctctaaacctgtaaaaaagtctctacctgaaaggtcaaacaaaggcactgaaaaaatc
tgtgcaccaccgaagacaagtcctcagaaagaagaaacaagaggaaaacctttggcaaaa
agttcgcccaaaaaggtccccccggcgaaaggaaaaaataaaattatcgagacttccttg
ccctggacggaaaaatacagaccgaaggttccaaatgagattgttgggaatcagtcgttg
gttactcaacttcacaactggctgtcccactggcatgatcaatttggaggtactggaagt
aaaggaaaggggaagaaattgaatgatgctggttccaagaaagctgtacttttgagtgga
acacctggtattggaaaaacaacatcagcaaagttggttagtcagatgcttggtttccag
gcagttgaggttaatgctagtgacagtcgtggaaaggcgaactcgaatattgccaaagga
attggtggcagcaatgcaaattctgtaaaagaacttgtcaataacgaagccatggctgcc
aacttcgataggtcaaagcacccgaagactgttctaatcatggatgaagtagatggaatg
tctgcaggcgacaggggaggtgttgcagatcttattgctagcattaaaatatcaaagatt
cctatcatctgcatttgtaatgaccgatatagtcaaaaactgaagagtttagtaaactac
tgtcttcccctcaattaccggaagcccacgaaacagcagatggcaaaaaggctgatgcat
attgctaaggcagaaggccttgaaattaatgaaattgccctggaagaactcgctgagaga
gtgaatggtgacatacgattggccgtaaatcagctccaatatatgagcctgtccatgtca
gtcatcaaatacgatgatatcaggcagcgcctgctaagcagtgcgaaggatgaagatatt
tcccctttcacagctgttgacaagttgtttggttacaatggtgggaagctgagaatggat
gaacggattgacctaagcatgagtgatccggatttggttcccctacttatacaggaaaac
tatctcaattataggccaagcggtaaagatgaggcaaaacgaatggatttactcgctcgt
gctgctgaatctattgccgatggagatattatcaacgtgcagattcgaagatacagacaa
tggcagctctctcaatcttgctgtgttgcatcttctattctcccagcttcattgttgcat
ggatcaagggaggtactcgagcagggagagcgtaatttcaatagatttggtgggtggctt
ggcaagaattctactgcgggaaaaaatagacggttaatggaggatctgcatgttcatgtc
cttgcttcccgtgaatccagcgctggaagggagacacttcgtgttgattatcttcccctt
ctcttgagccgcttgactagcccacttcagacactgcctaaggatgaagcagtttcagaa
gttgttgatttcatgaactcctactctataagccaggaggactttgatactattttggag
ttgggaaaatttaagggacgtgaaaatccgatggagggtgttccacctccagttaaagca
gctttgaccaaaaaatataatgagatgaataaaaccagaatggtacgtgtggcggacatg
gtgcagcttccgggagtgaaaaaggcgccaaagaagcgaatagctgctatgctggaacca
actgttgatagtttgagagatgaagatggtgagccgttagcagataatgaagaaggaaat
ggatcagacgctgaagaagactcagaagaagcaaccgatggagaaaagctggagtccaat
cttaaaaatctgaatgctagagggatccaagtggaattggatttgaaaggagctggaagc
tcaggttcaagaaaggcggctggtaaaggcagaggcagagggaaagcagctgatacgtct
gctgagaagaaagctacaggaagaggctctggtgccaagagaaagagataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (25)   
   Pfam (25)   
All databases (71)   

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