KEGG   Arabidopsis thaliana (thale cress): AT5G52040
Entry
AT5G52040         CDS       T00041                                 
Symbol
RS41
Name
(RefSeq) RNA-binding (RRM/RBD/RNP motifs) family protein
  KO
K12893  serine/arginine-rich splicing factor 4/5/6
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT5G52040 (RS41)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ath03041]
    AT5G52040 (RS41)
Spliceosome [BR:ath03041]
 Common components
  Common spliceosomal components
   SR proteins
    AT5G52040 (RS41)
SSDB
Motif
Pfam: RRM_1 RNA_bind Nup35_RRM_2 RRM_5 Nup35_RRM DUF2129
Other DBs
NCBI-GeneID: 835279
NCBI-ProteinID: NP_851174
TAIR: AT5G52040
UniProt: P92966 A0A7G2FHI5
Position
5:21130320..21133709
AA seq 356 aa
MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY
GRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPY
GKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPER
RRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARLSP
DYKRDDRRRERVASPENGAVRNRSPRKGRGESRSPPPYEKRRESRSPPPYEKRRESRSPP
PYEKRRERSRSRSKSSPENGQVESPGQIMEVEAGRGYDGADSPIRESPSRSPPAEE
NT seq 1071 nt   +upstreamnt  +downstreamnt
atgaagcctgtcttttgcggaaactttgagtatgatgctcgtgagagtgatcttgagcgg
cttttcagaaagtacggcaaggttgagagggttgatatgaaagctgggtttgcttttgtc
tatatggaagatgaaagggatgctgaagatgcaattcgagcgcttgatcgctttgaatat
ggtcgcacaggacgcagactccgtgttgagtggacaaagaatgaccgtggaggtgctgga
agatcaggtggttcgaggagatcatcttctggcttgagaccttccaagactctgtttgtg
atcaacttcgatgcacaaaacactaggactcgggacttggagaggcactttgagccgtat
ggtaaaattgttaatgttagaatcagaaggaattttgcattcatccaatatgaggcacaa
gaagatgctaccagagcactggatgctacaaattccagtaagctgatggataaggtgatc
tcagtggagtatgcagtgaaagatgatgattcaagaggaaatggatacagtcctgaaaga
cggcgtgataggtcacctgataggagaaggcgatcaccaagtccttacagaagagaaagg
ggaagtcctgactatggccgaggtgctagtccagtagctcacaaaagggaaaggactagt
cctgattatggtcgtggaagacgcagccccagcccttacaagagagccaggcttagccca
gattacaagagggatgaccgtaggagggagagagtggctagcccagagaatggagctgta
aggaaccgaagcccaagaaaaggacgtggtgaaagcaggagtcctcctccatatgagaag
aggagggaaagcaggagtcctccgccatatgagaagagaagggaaagcaggagtcctcct
ccatatgagaagaggagggagaggtcaaggtcaaggtcgaagtcaagccctgagaatggt
caagttgagagccctgggcaaataatggaagtagaagctggaagaggatacgatggagca
gacagcccgatacgcgagagcccctctcgttcgccgccagcagaggaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (2)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (10)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (7)   
DNA sequence (7)   
   RefSeq(nuc) (7)   
Protein domain (6)   
   Pfam (6)   
All databases (57)   

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