KEGG   Arabidopsis thaliana (thale cress): AT5G56130
Entry
AT5G56130         CDS       T00041                                 
Symbol
TEX1
Name
(RefSeq) Transducin/WD40 repeat-like superfamily protein
  KO
K12880  THO complex subunit 3
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03013  Nucleocytoplasmic transport
ath03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AT5G56130 (TEX1)
  09122 Translation
   03013 Nucleocytoplasmic transport
    AT5G56130 (TEX1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT5G56130 (TEX1)
   03041 Spliceosome [BR:ath03041]
    AT5G56130 (TEX1)
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     AT5G56130 (TEX1)
Spliceosome [BR:ath03041]
 Complex C
  Other components
   EJC/TREX
    AT5G56130 (TEX1)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    AT5G56130 (TEX1)
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 eIF2A NBCH_WD40 Nup160 CNH PROPPIN IKI3 MMS1_N SdiA-regulated
Other DBs
NCBI-GeneID: 835712
NCBI-ProteinID: NP_200424
TAIR: AT5G56130
UniProt: Q9FKT5
Position
5:complement(22722482..22725099)
AA seq 315 aa
MEETTIPFKSLHSREYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDL
ELKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQVELSGENINITYKPDG
THVAVGNRDDELTILDVRKFKPLHRRKFNYEVNEIAWNMPGDFFFLTTGLGTVEVLSYPS
LKPLDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDISDMLCLRTFTKLEWPVRTIS
FNYSGEYIASASEDLFIDIANVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNPKY
NTDEGVFRIFGFESS
NT seq 948 nt   +upstreamnt  +downstreamnt
atggaggagacgacgattcctttcaagagcttacatagcagagaatatcaaggtcataag
aagaaggtacattcagtagcttggaattcgaatggaacaaagcttgcttcgggttctgtt
gatcaaacggctcgcatttggaatatcgaaccacacggtcatagcaaggctaaggacctt
gagctaaagggtcatactgatagtgtggatcagctatgttgggatcccaaacattcagat
cttgttgctactgcctctggtgataaaagcgttcgtctttgggatgctcgcagtggaaaa
tgcacacagcaggtagaacttagtggagagaatataaacatcacctacaaacctgacggg
acacatgtagctgttggtaatagggatgatgagcttacaattctggatgtccgtaagttt
aaacctctacacaggcgcaaattcaattatgaggttaatgagattgcttggaacatgcct
ggagattttttcttcttgactactggacttggcactgttgaagttctttcatatccatct
cttaaaccacttgacactctcacagcccacacagccgggtgttattgtattgcaattgat
cctaaagggagatattttgctgtcgggagtgcggattccttagtaagcctttgggatatc
tcagacatgctttgtttgagaacatttaccaaacttgagtggccagtcagaacaataagc
ttcaactattcgggagagtatattgcttcagccagtgaagatttattcattgatattgct
aatgtccaaaccgggcggacggtgcatcagattccatgtcgggcagccatgaacagtgtt
gagtggaatcccaaatacaatttacttgcatatgcaggtgatgacaagaatcccaagtat
aatactgatgaaggtgttttccggatatttggttttgagagctcgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-EPD (1)   
   OC (1)   
   PGDBJ (1)   
   TAIR (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (42)   

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