KEGG   Bradyrhizobium diazoefficiens USDA 110: bll6773
Entry
bll6773           CDS       T00109                                 
Symbol
bll6773
Name
(GenBank) ORF_ID:bll6773; probable DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bja  Bradyrhizobium diazoefficiens USDA 110
Pathway
bja03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bja00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    bll6773 (bll6773)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bja03400]
    bll6773 (bll6773)
Enzymes [BR:bja01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     bll6773 (bll6773)
DNA repair and recombination proteins [BR:bja03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     bll6773 (bll6773)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: BAC52038
UniProt: Q89FC8
Position
complement(7468345..7471023)
AA seq 892 aa
MLRKLSTYRQKRDFEKTPEPSGEAAVASSKQRRFVIQKHDASRLHYDFRLEFDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWEADDPERGFK
KGDLKFTLHGEKLHGSWVLVRMRNDRDGGKRTNWLLIKHRDEYAREGEDILAEDKSVASG
RAMAQIAEGKGRAPKPFMLAKGARGKADAVWQSNRVEETKGRTVAPAPRAALKAGKTVNK
AAKKSATAATNAKTVADMPDFVAPQLCTPVERPPAGDGWCHEIKFDGYRVQLRIEDGKAT
LKTRKGLDWTDKFASIAKEANSLPEAMIDGEIVALDHNGAPNFSSLQAALSDGKTEDLIF
FAFDLLFAEGRDYRRLPLRERKSRLKELLEAQKRKSNQIRYVEHFESGGDAVLQSACKLE
LEGVVSKKLDAPYRSGRTESWTKAKCRAGHEVVIGGWKTTNGKFRSLMAGVHRGDHLVFV
GMVGTGFGADTVKRIMPSLKAMEAKDSPFSGKNAPKKTRDVHWLKPELVAEIEFAGFTAD
GNIRQAAFKGLRQDKPAEEVEAETPADTELARPSAGKRVPAKSGKKKDAGAAEVMGVVIS
KPDKELWPDGGDGEGVTKLDLARYFEAVGGWMIEHLKGRPCSILRAPDGIGGETFFQRHA
MQGTSNLLELAKVSGDRKPYLQIDRVEGLAAVAQIGGLELHPWNCAPDAYDTPGRLVFDL
DPAPDVGFADVVEAAKQMRQRLTDVGMESFCKTTGGKGLHVVVPLLHGARDKVSWKEAKA
FAQGICRWMADDEPERYLLNMSKKLRNGKIFLDYLRNDRLATAVAPLSPRARDGATVSMP
VTWAQVKGDLDPKRYTVRTVPGLLARSKAWEGYDDAAASIKAAMKKLAGKMR
NT seq 2679 nt   +upstreamnt  +downstreamnt
gtgctgcgaaaactctccacctatcgacagaagcgggacttcgagaagacccctgagccc
tccggcgaggccgcggtagcctcttcgaaacagcgacgcttcgtgatccagaagcatgac
gccagccggctgcactacgatttccgcctcgagttcgacggcgtgttcaagtcctgggcg
gtgacgaagggcccctcgctcgatccgcacgacaagcggctggcggtcgaggtcgaggac
catccgctcgactatggcgatttcgaaggaacgattccggaagggcagtatggcggcggc
acggttatgctgtgggaccgcggcacctgggaggccgatgatcccgagcgtggtttcaag
aagggcgacctgaagttcacgctgcacggcgaaaagctgcacggaagctgggtgctggtc
cgcatgcgcaacgatcgcgatggcggcaagcggaccaactggctgctgatcaagcatcgc
gacgaatatgcccgcgagggcgaggacatccttgccgaggacaagtcagtcgcctccggc
cgcgcgatggcgcagatcgccgaaggcaagggccgcgcgccaaagccgttcatgctggcg
aagggtgccaggggcaaggccgatgcagtgtggcaatccaaccgcgtcgaggagacgaag
gggcggaccgtcgcgccggcgccacgcgccgcgttgaaggccggcaagaccgtaaacaag
gccgcaaagaagagtgccacggcggctacgaacgccaagacggtcgcggacatgccggat
ttcgtcgcgccgcagctctgcacgccggtcgagcgtccgccggccggcgacggctggtgc
cacgagatcaagttcgacggctatcgcgtgcagcttcgcatcgaggatggcaaggcgacg
ctgaagacccgcaagggtctcgactggaccgacaagttcgcctccatcgcgaaggaggcg
aattcgctgccggaggccatgatcgacggcgagattgtcgcgctcgaccacaacggcgcg
ccgaacttctcctcgctccaggccgcgctgtcggatggcaagaccgaggacctcatcttc
tttgccttcgatctcctgttcgccgaaggccgcgactatcgccgccttccgctcagggag
cgtaagtcgcggctcaaggagctgctggaggcacaaaagcggaaatcgaaccagatccgc
tatgtcgagcatttcgagagcggcggcgacgccgtgctgcaatcggcctgcaagctcgag
cttgaaggcgtggtgtcgaagaagctggacgcaccgtaccggtcgggacggacggagagc
tggaccaaggccaaatgccgcgccggccatgaggtcgtgatcggcggctggaagaccacc
aacggcaaattccgctcgctgatggccggtgtgcatcgcggcgatcacctcgtcttcgtc
ggcatggtcggtaccggcttcggcgccgacacggtcaagcgcatcatgccgtcccttaaa
gccatggaggccaaggacagcccgttcagcggcaagaacgcgccgaagaagacgcgggac
gtgcactggctgaagccggagctcgtcgccgaaatcgagttcgccggcttcaccgccgac
ggcaacattcgccaggccgccttcaaggggctgcggcaggacaagccggccgaggaggtc
gaggcggagacgcccgccgataccgagctcgccaggccgtctgctggaaagcgcgttcct
gcgaagtccggaaagaagaaagatgccggcgctgccgaggtcatgggcgtcgtgatctcg
aagccggacaaggagctgtggccggatggcggcgacggcgagggcgttaccaagctcgat
ctcgcgcgctatttcgaggcggtcggcggctggatgatcgagcacctgaaggggcgacct
tgctcgatcctgcgcgcgcccgacggcatcggcggcgagacattcttccagcgccatgcc
atgcagggcacctcgaacctgctcgagctcgccaaggtgtccggcgatcgcaagccgtat
ttgcagatcgatcgcgtcgagggacttgccgcggtcgcgcagatcggcggcctcgagctg
catccctggaactgtgcgccggatgcctatgacacgccgggccggctggtgttcgatctc
gaccccgcgcctgatgtcggtttcgccgatgtcgtcgaggcggccaagcagatgcggcag
cggctcactgacgttggcatggagagcttctgcaagaccaccggcggcaagggcctgcat
gtggtggtgccgctgctccacggcgcgcgcgacaaggtgagctggaaggaggccaaggcg
ttcgcgcaaggaatctgccgatggatggcggatgacgagcccgagcgctatctgctcaac
atgtccaagaagctgcgcaacggaaagatctttctggactatctgcgcaacgatcgcctg
gcgacggcggtggcgccgctatcgccccgcgcccgcgacggcgcgaccgtgtcgatgcct
gtcacctgggcgcaggtgaagggcgatctcgatccgaagcgatatacggtgcggacggtg
ccgggcctgctggcgcgttccaaggcgtgggagggctatgacgatgcggccgcgtcgatc
aaggccgcgatgaagaagcttgcggggaagatgaggtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (35)   

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