KEGG   Bradyrhizobium sp. ORS 278: BRADO5823
Entry
BRADO5823         CDS       T00516                                 
Name
(GenBank) putative ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bra  Bradyrhizobium sp. ORS 278
Pathway
bra03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bra00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BRADO5823
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bra03400]
    BRADO5823
Enzymes [BR:bra01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BRADO5823
DNA repair and recombination proteins [BR:bra03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BRADO5823
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DUF5824
Other DBs
NCBI-ProteinID: CAL79487
RhizoBase: BRADO5823
UniProt: A4Z011
Position
complement(6037908..6040622)
AA seq 904 aa
MALKKLSTYRKKRDFEKTAEPSGDARIAPAARPRFVIQKHDATRLHYDLRLEFDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGEYGGGTVMLWDRGYWESDDPERGF
TKGDLKFTLEGEKLHGSWVLVRMRHDRTGGKRTNWLLIKHRDEFAREGAANDVLDADKSV
ASGRTMEQIAAGKGRAPKPFMLAKRQRMNADAIWHSNRSDGETKTSKVSTKAASSRTKAA
KAGRAKSSRVSKMAEPKTVSSLPDFVPPELCTSVAQPPSGEGWAHEIKFDGYRVQIRVED
GQAALKTRKGLDWTAKFGVIAEAAAKLPDAIIDGEIVALDKDGNPNFSALQAAISAGQTD
ELVFFAFDLMFVEEFDLRRQPLRERKARLAKLLKANIKGKTPVIRYVEHFESDGEAVLES
ARKLSLEGIVSKKLDSAYHSGRTESWTKAKTRPGHEVVVGGWKTTNGKFRSLMVGVNKDD
HLAYVGIVGTGFGQDTVKAIMPALKAAASDKSPFSGKNAPRKAREVHWLKPELVAEIEFA
GFTGDGNVRQASFKGLRQDKPAREVVAEEPVVAAKVTKPVARAAATVATGGTTVHKTPSR
TKGAATVMGVAISKPDKALWPDAGDGEPVTKLDLATYLEAVGDWMIEHLKGRPCSIVRAP
DGIGGERFFQRHGMQGMSDLLELVKVSGDRKPYLQIDRVEGLIAVAQVAAVELHPWNCAP
DAYDVPGRLVFDLDPAPNVAFEEVIAAAKEMRQRLKTLGLESFCKTTGGKGLHVVTPLLH
GARDQVTWPEAKAFAQGVCQWMANDSPDDYLLNMSKKLRKGKIFLDYLRNDRMSTAVAVL
SPRAREGATVSMPVTWAQVKNGLDPKRYTIRTVPALLAKTKAWDGYDDAAGAIRPAIRKL
TDTL
NT seq 2715 nt   +upstreamnt  +downstreamnt
gtggcgctcaagaagctttccacctatcgcaagaagcgcgatttcgaaaaaacggcagag
ccgtccggtgacgccaggatcgcgcccgccgcgcggccgcgcttcgtcatccagaagcat
gacgccacccggctccattacgatctcaggctcgaattcgacggcgtcttcaagtcctgg
gcagtgaccaaggggccgtcgctcgatccgcacgacaagcgcctcgcggttgaggtcgag
gatcatccgctcgactatggcgatttcgaaggcacgattcctgaaggcgaatatggcggc
ggcacggtgatgctgtgggaccgcggctattgggagagcgatgatcccgaacgcggcttc
acgaagggcgacctgaaatttacgcttgagggtgagaagctgcacggcagctgggtgctg
gtgcggatgcgccacgaccgcaccggcggcaagcgcaccaactggctgctgatcaagcat
cgcgacgagttcgcccgggaaggcgcggccaacgacgttctcgatgccgacaagtcggtg
gcctcgggtcgcaccatggagcagatcgcggccggcaagggcagggcaccgaagccgttc
atgctcgccaagaggcagcgcatgaatgccgacgccatatggcactccaatcgcagcgac
ggcgaaacgaagaccagcaaggtgtcgaccaaggcagcatcgtcgagaacgaaggccgcg
aaggcagggagggcgaagtcctcgcgcgtgtcgaagatggcggagccaaagaccgtctcg
tcgctgccagacttcgtgccgcccgagctgtgcacctccgtcgcacagccgcccagcggc
gagggctgggcgcacgagatcaagttcgacggctaccgcgtgcagatccgggtcgaggat
ggccaggcggcgctgaagacgcgcaagggcctcgactggaccgccaagttcggcgtgatc
gccgaggcggctgccaagctgccggatgcgatcatcgacggcgagatcgttgcgctcgac
aaggatggtaacccgaacttctccgcgctgcaggcggcgatctcggccgggcagaccgac
gagttggtgttctttgccttcgacctgatgttcgtcgaggagttcgacctgcgccgccag
ccgctccgcgagcgcaaagcacgcctggccaagctcttgaaggccaacatcaagggcaag
acgcccgtgatccgttacgtcgagcatttcgagagcgacggtgaagcggtgctggagtcg
gcgcgcaagctatccctcgaagggatcgtctcgaagaagctggactcggcctatcactcc
ggtcgcaccgagagctggaccaaggcgaagacccgtcccggccacgaggtcgtggtcggc
ggctggaagaccaccaacggcaaattccgctcgttgatggtcggcgtcaacaaggacgat
catctcgcttatgtcggcatcgtcggcaccggcttcggtcaggatacggtgaaggcgatc
atgcctgcgctgaaggcggccgcatccgacaagagtccgttcagcggcaagaatgccccg
cgcaaggcgcgcgaggtgcattggctcaagcccgagctggtcgccgagatcgagttcgca
ggcttcaccggagacggcaatgtgagacaggcctcgttcaaggggctgcgtcaggacaag
ccggcgcgcgaggtcgtcgcggaggagccggtggtcgcggccaaggtgacgaagccggtg
gcgcgggccgccgccacggtcgcgaccggcggcaccacggtccacaagacgccgtcacgc
accaagggcgcggccacggtgatgggcgttgcgatctcgaagccggacaaggcgctatgg
ccggatgcgggcgatggcgagccggtcacgaagctcgatctcgccacctatctggaagcg
gtcggcgactggatgatcgagcatctgaagggccggccgtgctcgatcgtccgtgcgccc
gacggaatcggcggcgagaggttttttcagcggcacggcatgcagggcatgtcggacctg
ctcgaactggtaaaggtgtccggagaccggaagccttatctgcagatcgatcgcgttgag
ggactgatcgcggtggcgcaagtggccgcggtcgagctgcatccgtggaattgtgcgccc
gatgcctacgatgtgccgggccgcctggtgttcgatctcgatccggcacccaacgttgca
ttcgaggaggtgatcgcggcggccaaggagatgcggcagcgtctcaagacgctcggcctg
gagagcttctgcaagaccaccggcggcaagggcctgcatgtcgtgacaccgctgctgcat
ggcgcgcgcgaccaggtgacatggccggaggcgaaagcgtttgcgcagggcgtgtgccag
tggatggccaatgacagccccgacgactatttgctcaacatgtcgaagaagctgcgcaag
ggaaagatcttcctcgactatctgcgcaacgatcggatgtcgacggcggttgccgtgctg
tcgccgcgggcgcgcgagggcgcgacggtgtcgatgccggtgacgtgggcgcaggtgaag
aacggacttgatcccaagcgctacaccatccgcaccgtaccggcgctgctggccaagacc
aaggcgtgggatggctacgatgatgcagccggagcgatcaggccggcaatcaggaagctg
accgacacgttgtga

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