KEGG   Canis lupus familiaris (dog): 100856253
Entry
100856253         CDS       T01007                                 
Symbol
SLC6A13
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 2 isoform X1
  KO
K05046  solute carrier family 6 (neurotransmitter transporter, GABA) member 13
Organism
cfa  Canis lupus familiaris (dog)
Pathway
cfa04721  Synaptic vesicle cycle
cfa04727  GABAergic synapse
Brite
KEGG Orthology (KO) [BR:cfa00001]
 09150 Organismal Systems
  09156 Nervous system
   04727 GABAergic synapse
    100856253 (SLC6A13)
   04721 Synaptic vesicle cycle
    100856253 (SLC6A13)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:cfa02000]
    100856253 (SLC6A13)
Transporters [BR:cfa02000]
 Solute carrier family (SLC)
  SLC6: Sodium- and chloride-dependent neurotransmitter transporter
   100856253 (SLC6A13)
SSDB
Motif
Pfam: SNF
Other DBs
NCBI-GeneID: 100856253
NCBI-ProteinID: XP_003639989
Ensembl: ENSCAFG00000015756
VGNC: 46456
UniProt: A0A8C0RK30 A0A8I3Q066
Position
27:4345500..4381643
AA seq 602 aa
MDSRVSSTTSNGETKAAYPVMEKAKGEGTLERGHWNNKMEFVLSVAGEIIGLGNVWRFPY
LCYKNGGGAFFIPYLIFLFTCGIPVFLLETALGQYTSQGGVTAWRKICPIFEGIGYASQM
IVILLNIYYIIVLAWALFYLFSSFTIDLPWGSCHHEWNTEYCVEFQRTNGSLNVTSENAT
SPVIEFWERRVLKISDGIHDLGALRWELALCLLVAWVICYFCIWKGVKSTGKVVYFTATF
PYLMLVVLLIRGVTLPGAAQGIQFYLYPNLTRLWDPQVWMDAGTQIFFSFAICLGCLTAL
GSYNKYHNNCYRDCIALCFLNSGTSFVAGFAIFSVLGFMSQEQGVPISEVAESGPGLAFI
AYPRAVVMLPFSPLWACCFFFMVVLLGLDSQFVCVESLVTALVDMYPHIFRKKNRRELLI
LGVSVTSFFVGLVMLTEGGMYVFQLFDYYAASGMCLLFVAIFESLCVAWVYGAGRFYNNI
EDMIGYRPWPLIKYCWLFLTPAVCTATFLFSLIKYTPLTYNKKYTYPWWGDALGWFLALS
SMVCIPAWSFYKLGTLKGSLKERIRQLRCPAEDLPGWSGAEPSAPATPRTSLLIPAELES
RC
NT seq 1809 nt   +upstreamnt  +downstreamnt
atggatagcagggtctcgagcaccaccagtaatggagagacaaaggccgcgtacccagtc
atggaaaaggcaaagggagagggcactctggagcggggacactggaacaacaagatggag
tttgtgctgtcagtggctggggagatcattggcctgggcaacgtctggaggtttccctat
ctctgctacaaaaatgggggaggtgcctttttcatcccctacctcatcttcctctttacc
tgtggcattcctgtcttcctcttggagacagcactgggccagtacactagccagggaggc
gtcacagcctggaggaagatttgccccatctttgagggcattggctacgcctcccagatg
attgtcatcctcctcaacatctactacatcattgtcctggcctgggccctcttctacctc
tttagcagcttcaccattgaccttccctggggaagctgccaccatgagtggaatacagaa
tactgtgtggagttccagaggaccaatggctccctgaatgtgacctctgagaatgccacc
tctcctgtcatcgagttctgggagaggcgggtcctgaagatctctgatggcatccacgac
ctgggggccctgcgctgggagctggccctgtgcctcctggttgcctgggtcatctgctat
ttctgcatctggaagggggtcaagtccacaggcaaggtggtgtacttcacagccacattc
ccttacctcatgctggtggtcctgttaattcgaggggtgacactgcctggggcagcccaa
ggaattcagttttacctgtacccaaacctcacacgtctgtgggatccccaggtgtggatg
gacgcaggcacccagatcttcttttccttcgccatctgcctagggtgcctgactgccctg
ggcagctacaacaaataccacaacaactgctacagggactgcatcgccctctgcttcctc
aacagcggtaccagcttcgtggccggatttgccatcttctctgtcctgggcttcatgtct
caggagcagggggtgcccatctctgaggtggctgagtctggccccggccttgctttcatt
gcctacccccgggccgtggtgatgctgcccttctctcctctctgggcctgctgcttcttc
ttcatggtcgtcctcctgggactggacagccagtttgtgtgcgtagaaagcctggtgaca
gcgctggtggacatgtacccccacatattccgcaagaagaaccggagggagctcctcatt
cttggcgtgtctgtcacctccttctttgtcgggctggtcatgcttacagagggcggtatg
tacgtatttcagctctttgactactatgcagccagtggcatgtgcctcctgtttgtggcc
atctttgagtccctctgtgtggcttgggtttatggagccgggcgcttctacaacaacatt
gaagacatgattgggtacaggccatggcctcttatcaaatattgctggctgttcctcacc
ccagctgtctgcacagccaccttcctcttctccctgatcaagtacaccccgctgacctac
aacaagaagtacacgtacccgtggtggggcgatgccctgggctggttcctggctctgtcc
tccatggtctgcattcccgcctggagcttctataaactcggcaccctcaagggctccctc
aaagagagaattcgccagctccggtgcccggcggaggacctgcccggatggagcggagca
gagccctctgcccctgccacgcccaggacatcgcttctcattcccgcagagctagagtcg
cgctgctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (57)   
   UniProt (2)   
   RefSeq(pep) (55)   
DNA sequence (60)   
   RefSeq(nuc) (60)   
Protein domain (1)   
   Pfam (1)   
All databases (143)   

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