KEGG   Canis lupus familiaris (dog): 403170
Entry
403170            CDS       T01007                                 
Symbol
HMGB1
Name
(RefSeq) high mobility group protein B1
  KO
K10802  high mobility group protein B1
Organism
cfa  Canis lupus familiaris (dog)
Pathway
cfa03410  Base excision repair
cfa04140  Autophagy - animal
cfa04217  Necroptosis
cfa04613  Neutrophil extracellular trap formation
Brite
KEGG Orthology (KO) [BR:cfa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    403170 (HMGB1)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    403170 (HMGB1)
  09143 Cell growth and death
   04217 Necroptosis
    403170 (HMGB1)
 09150 Organismal Systems
  09151 Immune system
   04613 Neutrophil extracellular trap formation
    403170 (HMGB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cfa03036]
    403170 (HMGB1)
   03400 DNA repair and recombination proteins [BR:cfa03400]
    403170 (HMGB1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cfa04147]
    403170 (HMGB1)
Chromosome and associated proteins [BR:cfa03036]
 Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    403170 (HMGB1)
DNA repair and recombination proteins [BR:cfa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     403170 (HMGB1)
   MMR (mismatch excision repair)
    Other MMR factors
     403170 (HMGB1)
Exosome [BR:cfa04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   403170 (HMGB1)
SSDB
Motif
Pfam: HMG_box_2 HMG_box NOA36 HMG_box_5 Nop14
Other DBs
NCBI-GeneID: 403170
NCBI-ProteinID: NP_001002937
Ensembl: ENSCAFG00000006597
VGNC: 59082
UniProt: Q6YKA4
Position
25:9596948..9603279
AA seq 215 aa
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
NT seq 648 nt   +upstreamnt  +downstreamnt
atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattctttgtg
caaacttgccgagaggagcacaagaagaagcacccagatgcttcagtcaacttctcagag
ttttctaagaagtgctcagaaaggtggaagaccatgtctgctaaagagaaaggaaaattt
gaagacatggctaaggcggacaaggcccgttatgaaagagaaatgaaaacttatatcccc
cctaaaggggaaacaaaaaagaagttcaaggatcccaatgcacccaagaggcctccctcg
gcctttttcttgttttgttctgagtatcgcccaaaaatcaaaggagagcatcccggccta
tccattggtgatgttgcaaagaaactgggagagatgtggaataacactgctgcagatgac
aagcagccttatgaaaagaaggctgctaagctgaaggaaaaatatgaaaaggatattgct
gcgtaccgagctaaaggaaagcctgatgcggcaaaaaagggagttgtcaaggctgaaaag
agcaagaaaaagaaggaagaggaggaagacgaggaggatgaagaggatgaggaggaggaa
gaagatgaagaagatgaagatgaagaagaagatgatgatgatgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (40)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (11)   
   RefSeq(nuc) (3)   
   GenBank (4)   
   EMBL (4)   
Protein domain (5)   
   Pfam (5)   
All databases (70)   

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