KEGG   Canis lupus familiaris (dog): 474839
Entry
474839            CDS       T01007                                 
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
cfa  Canis lupus familiaris (dog)
Pathway
cfa03013  Nucleocytoplasmic transport
cfa03015  mRNA surveillance pathway
cfa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cfa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    474839 (DDX39B)
  09122 Translation
   03013 Nucleocytoplasmic transport
    474839 (DDX39B)
   03015 mRNA surveillance pathway
    474839 (DDX39B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cfa03019]
    474839 (DDX39B)
   03041 Spliceosome [BR:cfa03041]
    474839 (DDX39B)
Enzymes [BR:cfa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     474839 (DDX39B)
Messenger RNA biogenesis [BR:cfa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     474839 (DDX39B)
Spliceosome [BR:cfa03041]
 Complex C
  Other components
   EJC/TREX
    474839 (DDX39B)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    474839 (DDX39B)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-GeneID: 474839
NCBI-ProteinID: NP_001014399
Ensembl: ENSCAFG00000000509
VGNC: 39855
UniProt: Q5WR10
Position
12:complement(1169048..1179440)
AA seq 428 aa
MAENDVDNELLDYEEDEVETAAGGDGSEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq 1287 nt   +upstreamnt  +downstreamnt
atggcagaaaatgatgtggacaatgaactcttggactatgaagaagatgaagtagagaca
gcagctgggggagacgggtctgaggcccctgccaagaaggatgtcaagggttcctacgtc
tccatccacagctctggctttcgtgacttcctgctgaagccagagttgctccgggccatt
gttgactgtggctttgaacatccatcagaagtccagcatgagtgcatccctcaggccatt
ctgggaatggatgtcctatgccaggccaagtcagggatgggaaagacagcagtgtttgtg
ctggccacactacaacagttggagccagttactggacaggtgtctgtgctggtgatgtgt
cacacccgggagttggcatttcagatcagcaaggagtatgagcgcttctctaaatacatg
cccaatgtcaaggtcgcggtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaattgcccgcatattgttgtggggacccctggccgcatcctcgccctggct
cgaaataagagcctcaatctcaaacacattaaacactttatcttggatgaatgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgtcctgtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctcgatgtccttgagttcaatcaggtggtgatctttgtgaagtctgtgcagcgttgc
attgccctcgcccagctgctggtagagcagaacttcccagccattgccatccaccgaggg
atgccccaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacgaatt
cttgtggctaccaacctatttggccgaggcatggacattgagcgggtgaacattgccttc
aactatgacatgcctgaggattctgacacttacctgcatcgggtggcccgagcaggccgg
tttggcaccaagggcttggccatcacatttgtatcagatgaaaatgatgccaagatcctc
aatgatgtgcaggatcgctttgaagtcaatattagtgagctgccagatgagatagacatt
tcctcttacattgaacagacgcggtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (6)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (4)   
   Pfam (4)   
All databases (56)   

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